Skip to main content

Full text of "USPTO Patents Application 09993647"

See other formats


(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) 



(19) World Intellectual Property Organization 

International Bureau 

(43) International Publication Date 
31 October 2002 (31.10.2002) 




PCT 



(10) International Publication Number 

WO 02/085859 Al 



(51) International Patent Classification 7 : C07D 213/75, 

217/22, 401/12, 215/38, 403/12, A61K 31/44, 31/47, 
A61P 29/00 



65 Winterhill Road, Madison, CT 06443 (US). WOOD, 
Jill, E. [US/US]; 3007 Ridge Road, North Haven, CT 
06473 (US). 



(21) International Application Number: PCT/US02/12064 



(22) International Filing Date: 17 April 2002 (17.04.2002) 



(25) Filing Language: 

(26) Publication Language: 

(30) Priority Data: 

09/838,286 



English 



English 



20 April 2001 (20.04.2001) US 



(71) Applicant (for all designated States except US): BAYER 
CORPORATION [US/US]; 100 Bayer Road, Pittsburgh, 
PS 15205 (US). 

(72) Inventors; and 

(75) Inventors/Applicants (for US only): DUMAS, Jacques 

[FR/US] ; 98 Farmview Road, Bethany, CT 06524 (US). 
RIEDL, Bernd [DE/DE]; Von der Goltz Strasse 7, 42329 
Wuppertal (DE). KHIRE, Uday [EN/US] ; 101 Tanglewood 
Drive, Hamden, CT 06518 (US). SIBLEY, Robert, N. 
[US/US]; 1187 Mt. Carmel Avenue, North Haven, CT 
06473 (US). HATOUM-MOKDAD, Holia [US/US]; 43 
Joseph Lane, Hamden, CT 06514 (US). MONAHAN, 
Mary-Katherine [US/US]; 134 Park Avenue, Hamden, 
CT 06517 (US). GUNN, David, E. [US/US]; 40 Wood 
Street, Hamden, CT 06517 (US). LOWINGER, Timothy, 
B. [CA/JP]; Wotanstrasse 11, D-42117 Wuppertal (DE). 
SCOTT, William, J. [US/US]; 210 Saddle Hill Drive, 
Guilford, CT 06437 (US). SMITH, Roger, A. [US/US]; 



(74) Agents: ZELANO, Anthony, J. et al.; Millen, White, Ze- 
lano & Branigan, P.C., Suite 1400, Arlington Courthouse 
Plaza I, 2200 Clarendon Boulevard, Arlington, VA 22201 
(US). 

(81) Designated States (national): AE, AG, AL, AM, AT, AU, 

AZ, BA, BB, BG, BR, BY, BZ, CA, CH, CN, CO, CR, CU, 
CZ, DE, DK, DM, DZ, EC, EE, ES, FI, GB, GD, GE, GH, 
GM, HR, HU, ID, IL, IN, IS, JP, KE, KG, KP, KR, KZ, LC, 
LK, LR, LS, LT, LU, LV, MA, MD, MG, MK, MN, MW, 
MX, MZ, NO, NZ, PH, PL, PT, RO, RU, SD, SE, SG, SI, 
SK, SL, TJ, TM, TR, TT, TZ, UA, UG, US, UZ, VN, YU, 
ZA, ZW. 

(84) Designated States (regional): ARIPO patent (GH, GM, 
KE, LS, MW, MZ, SD, SL, SZ, TZ, UG, ZM, ZW), 
Eurasian patent (AM, AZ, BY, KG, KZ, MD, RU, TJ, TM), 
European patent (AT, BE, CH, CY, DE, DK, ES, FI, FR, 
GB, GR, IE, IT, LU, MC, NL, PT, SE, TR), OAPI patent 
(BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, ML, MR, 
NE, SN, TD, TG). 

Published: 

— with international search report 

— before the expiration of the time limit for amending the 
claims and to be republished in the event of receipt of 
amendments 

For two-letter codes and other abbreviations, refer to ihe "Guid- 
ance Notes on Codes and Abbreviations " appearing at the begin- 
ning of each regular issue of the PCT Gazette- 



9\ 

oo 

IT) 
OO 



(54) Title: HETEROARYL UREAS CONTAINING NITROGEN HETERO-ATOMS AS p38 KINASE INHIBITORS 



(57) Abstract: This invention relates to the use of a group of heteroaryl ureas containing nitrogen in treating p38 mediated diseases, 
and pharmaceutical compositions for use in such therapy. 



WO 02/085859 



PCT/US02/12064 



HETEROARYL UREAS CONTAINING NITROGEN HETERO-ATOMS AS 

p38 KINASE INHIBITORS 

Cross Reference to Related Applications 

This is a continuation-in-part of application Serial No. 09/778,039 filed February 
7, 2001, which is a continuation-in-part of Serial No. 09/425,229 filed October 22, 1999, 
which is a continuation of 09/257,265 filed February 25, 1999 which claims priority to 
provisional application 60/115,878, filed January 13, 1999. 

Field of the Invention 

This invention relates to the use of a group of heteroaryl ureas containing nitrogen 
hetero atoms in treating cytokine mediated diseases and proteolytic enzyme' mediated 
25 diseases, and pharmaceutical compositions for use in such therapy. 

Background of the Invention 

Two classes of effector molecules which are critical for the progression of 
rheumatoid arthritis are pro-inflammatory cytokines and tissue degrading proteases. 
30 Recently, a family of kinases was described which is instrumental in controlling the 
transcription and translation of the structural genes coding for these effector molecules. 

The mitogen-activated protein (MAP) kinase family is made up of a series of 
structurally related proline-directed serine/threonine kinases which are activated either by 
growth factors (such as EGF) and phorbol esters (ERIC), or by JJL-1, TNFa or stress (p38, 
35 JNK). The MAP kinases are responsible for the activation of a wide variety of 

1 



WO 02/085859 



PCT/US02/12064 



transcription factors and proteins involved in transcriptional control of cytokine 
production. A pair of novel protein kinases involved in the regulation of cytokine 
synthesis was recently described by a group from SmithKline Beecham (Lee et al. Nature 
1994, 372, 739). These enzymes were isolated based on their affinity to bond to a class 
5 of compounds, named CSAEDSs (cytokine suppressive anti-inflammatory drugs) by 
SKB. The CSAIDs, bicyclic pyridinyl imidazoles, have been shown to have cytokine 
inhibitory activity both in vitro and in vivo. The isolated enzymes, CSBP-1 and -2 
(CSATD binding protein 1 and 2) have been cloned and expressed. A murine homologue 
for CSBP-2, p38, has also been reported (Han et al. Science 1994, 265, 808). 

10 Early studies suggested that CSAIDs function by interfering with m-RNA 

translational events during cytokine biosynthesis. Inhibition of p38 has been shown to 
inhibit both cytokine production (eg., TNFa, IL-1, IL-6, EL-8) and proteolytic enzyme 
production (eg., MMP-1, MMP-3) in vitro and/or in vivo. 

Clinical studies have linked TNFa production and/or signaling to a number of 

15 diseases including rheumatoid arthritis (Maini. J. Royal Coll. Physicians London 1996, 
30, 344). In addition, excessive levels of TNFa have been implicated in a wide variety 
of inflammatory and/or immunomodulatory diseases, including acute rheumatic fever 
(Yegin et al. Lancet 1997, 349, 170), bone resorption (Pacifici et al. J. Clin. Endocrinol. 
Metabol. 1991, 82, 29), postmenopausal osteoperosis (Pacifici et al. /. Bone Mineral Res. 

20 1996, 11, 1043), sepsis (Blackwell et al. Br. J. Anaesth. 1996, 77, 110), gram negative 
sepsis (Debets et al. Prog. Clin. Biol. Res. 1989, 308, 463), septic shock (Tracey et al. 
Nature 1987, 330, 662; Girardin et al. New England J. Med. 1988, 319, 397), endotoxic 
shock (Beutler et al. Science 1985, 229, 869; Ashkenasi et al. Proc. Nat 'I. Acad. Sci. USA 
1991, 88, 10535), toxic shock syndrome, (Saha et al. J. Immunol. 1996, 157, 3869; Lina 

25 et al. FEMS Immunol. Med. Microbiol. 1996, 13, 81), systemic inflammatory response 
syndrome (Anon. Crit. Care Med. 1992, 20, 864), inflammatory bowel diseases 
(Stokkers et al. J. Inflamm. 1995-6, 47, 97) including Crohn's disease (van Deventer et 
al. Aliment. Pharmacol. Therapeu. 1996, 10 (Suppl. 2), 107; van Dullemen et al. 
Gastroenterology 1995, 109, 129) and ulcerative colitis (Masuda et al. J. Clin. Lab. 

30 Immunol. 1995, 46, 111), Jarisch-Herxheimer reactions (Fekade et al. New England J. 
Med. 1996, 335, 311), asthma (Amrani et al. Rev. Malad. Respir. 1996, 13, 539), adult 



2 



WO 02/085859 



PCT/US02/12064 



respiratory distress syndrome (Roten et al. Am. Rev. Respir. Dis. 1991, 143, 590; Suter et 
al. Am. Rev. Respir. Dis. 1992, 145, 1016), acute pulmonary fibrotic diseases (Pan et al. 
Pathol. Int. 1996, 46, 91), pulmonary sarcoidosis (Ishioka et al. Sarcoidosis Vasculitis 
Diffuse Lung Dis. 1996, 13, 139), allergic respiratory diseases (Casale et al. Am. J. 
5 Respir. Cell Mol. Biol. 1996, 15, 35),- silicosis (Gossart et al. J. Immunol. 1996, 156, 
1540; Vanhee et al. Eur. Respir. J. 1995, 8, 834), coal worker's pneumoconiosis (Borm 
et al. Am. Rev. Respir. Dis. 1988, 138, 1589), alveolar injury (Horinouchi et al. Am. J. 
Respir. Cell Mol. Biol. 1996, 14, 1044), hepatic failure (Gantner et al. J. Pharmacol. Exp. 
Therap. 1997, 280, 53), liver disease during acute inflammation (Kim et al. J. Biol. 

10 Chem. 1997, 272, 1402), severe alcoholic hepatitis (Bird et al. Ann. Intern. Med. 1990, 
112, 917), malaria (Grau et al. Immunol. Rev. 1989, 112, 49; Taveme et al. Parasitol. 
Today 1996, 12, 290) including Plasmodium falciparum malaria (Perlmann et al. Infect. 
Immunit. 1997, 65, 116) and cerebral malaria (Rudin et al. Am. J. Pathol. 1997, 150, 
257), non-insulin-dependent diabetes mellitus (NIDDM; Stephens et al. J. Biol. Chem. 

15 1997, 272, 971; Ofei et al. Diabetes 1996, 45, 881), congestive heart failure (Doyama et 
al. Int. J. Cardiol. 1996, 54, 217; McMurray et al. Br. Heart J. 1991, 66, 356), damage 
following heart disease (Malkiel et al. Mol. Med. Today 1996, 2, 336), atherosclerosis 
(Parums et al. J. Pathol. 1996, 179, A46), Alzheimer's disease (Fagarasan et al. Brain 
Res. 1996, 723, 231; Aisen et al. Gerontology 1997, 43, 143), acute encephalitis 

20 (Ichiyama et al. J. Neurol. 1996, 243, 457), brain injury (Cannon et al. Crit. Care Med. 
1992, 20, 1414; Hansbrough et al. Surg. Clin. N. Am. 1987, 67, 69; Marano et al. Surg. 
Gynecol. Obstetr. 1990, 170, 32), multiple sclerosis (M.S.; Coyle. Adv. Neuroimmunol. 
1996, 6, 143; Matusevicius et al. J. Neuroimmunol. 1996, 66, 115) including demyelation 
and oligiodendrocyte loss in multiple sclerosis (Brosnan et al. Brain Pathol. 1996, 6, 

25 243), advanced cancer (MucWierzgon et al. J. Biol. Regulators Homeostatic Agents 
1996, 10, 25), lymphoid malignancies (Levy et al. Crit. Rev. Immunol. 1996, 16, 31), 
pancreatitis (Exley et al. Gut 1992, 33, 1126) including systemic complications in acute 
pancreatitis (McKay et al. Br. J. Surg. 1996, 83, 919), impaired wound healing in 
infection inflammation and cancer (Buck et al. Am. J. Pathol. 1996, 149, 195), 

30 myelodysplastic syndromes (Raza et al. Int. J. Hematol. 1996, 63, 265), systemic lupus 
erythematosus (Maury et-al. Arthritis Rheum. 1989, 32, 146), biliary cirrhosis (Miller et 



3 



WO 02/085859 



PCT/US02/12064 



al. Am. J. Gasteroenterolog. 1992, 87, 465), bowel necrosis (Sun et al. J. Clin. Invest. 

1988, 81, 1328), psoriasis (Christophers. Austr. J. Dermatol. 1996, 37, S4), radiation 
injury (Redlich et al. J. Immunol 1996, 157, 1705), and toxicity following administration 
of monoclonal antibodies such as OKT3 (Brod et al. Neurology 1996, 46, 1633). TNFa 

5 levels have also been related to host-versus-graft reactions (Piguet et al. Immunol. Ser. 
1992, 56, 409) including ischemia reperfusion injury (Colletti et al. Clin. Invest. 1989, 
85, 1333) and allograft rejections including those of the kidney (Maury et al. J. Exp. 
Med. 1987, 166, 1132), liver (hnagawa et al. Transplantation 1990, 50, 219), heart 
(Boiling et al. Transplantation 1992, 53, 283), and skin (Stevens et al. Transplant. Proc. 
10 1990, 22, 1924), lung allograft rejection (Grossman et al. Immunol. Allergy Clin. N. Am. 

1989, 9, 153) including chronic lung allograft rejection (obliterative bronchitis; LoCicero 
et al. J. Thorac. Cardiovasc. Surg. 1990, 99, 1059), as well as complications due to total 
hip replacement (Cirino et al. Life Sci. 1996, 59, 86). TNFa has also been linked to 
infectious diseases (review: Beutler et al, Crit. Care Med. 1993, 21, 5423; Degre. 

15 Bio therapy 1996, 8, 219) including tuberculosis (Rook et al. Med. Malad. Infect. 1996, 
26, 904), Helicobacter pylori infection during peptic ulcer disease (Beales et al. 
Gastroenterology 1997, 112, 136), Chaga's disease resulting from Trypanosoma cruzi 
infection (Chandrasekar et al. Biochem. Biophys. Res. Commun. 1996, 223, 365), effects 
of Shiga-like toxin resulting from E. coli infection (Harel et al. J. Clin. Invest. 1992, 56, 

20 ' 40), the effects of enterotoxin A resulting from Staphylococcus infection (Fischer et al. J. 
Immunol. 1990, 144, 4663), meningococcal infection (Waage et al. Lancet 1987, 355; 
Ossege et al. J. Neurolog. Set 1996, 144, 1), and infections from Borrelia burgdorferi 
(Brandt et al. Infect. Immunol 1990, 58, 983), Treponema pallidum (Chamberlin et al. 
Infect. Immunol. 1989, 57, 2872), cytomegalovirus (CMV; Geist et al. Am. J. Respir. Cell 

25 Mol Biol. 1997, 16, 31), influenza virus (Beutler et al. Clin. Res. 1986, 34, 491a), Sendai 
virus (Goldfield et al. Proc. Nat 'I. Acad. Sci. USA 1989, 87, 1490), Theiler's 
encephalomyelitis virus (Sierra et al. Immunology 1993, 78, 399), and the human 
immunodeficiency virus (HIV; Poli. Proc. Nat 'I. Acad. Sci. USA 1990, 87, 782; 
Vyakaram et al. AIDS 1990, 4, 21; Badley et al. J. Exp. Med. 1997, 185, 55). 

30 Because inhibition of p38 leads to inhibition of TNFa production, p38 inhibitors 

will be useful in treatment of the above listed diseases. 



4 



WO 02/085859 



PCT/US02/12064 



A number of diseases are thought to be mediated by excess or undesired matrix- 
destroying metalloprotease (MMP) activity or by an imbalance in the ratio of the MMPs 
to the tissue inhibitors of metalloproteinases (TIMPs). These include osteoarthritis 
(Woessner et al. J. Biol. Chem. 1984, 259, 3633), rheumatoid arthritis (Mullins et al. 
5 Biochim. Biophys. Acta 1983, 695, 117; Woolley et al. Arthritis Rheum. 1977, 20, 1231; 
Gravallese et al. Arthritis Rheum. 1991, 34, 1076), septic arthritis (Williams et al. 
Arthritis Rheum. 1990, 33, 533), tumor metastasis (Reich et al. Cancer Res. 1988, 48, 
. 3307; Matrisian et al. Proc. Nat'l. Acad. Set, USA 1986, 83, 9413), periodontal diseases 
(Overall et al. J. Periodontal Res. 1987, 22, 81), corneal ulceration (Bums et al. Invest. 

10 Opthalmol Vis. Sci. 1989, 30, 1569), proteinuria (Baricos et al. Biochem. J. 1988, 254, 
609), coronary thrombosis from atherosclerotic plaque rupture (Henney et al. Proc. Nat'l. 
Acad. Set, USA 1991, 88, 8154), aneurysmal aortic disease (Vine et al. Clin. Sci. 1991, 
81, 233), birth control (Woessner et al. Steroids 1989, 54, 491), dystrophobic 
epidermolysis bullosa (Kronberger et al. J. Invest. Dermatol. 1982, 79, 208), 

15 degenerative cartilage loss following traumatic joint injury, osteopenias mediated by 
MMP activity, tempero mandibular joint disease, and demyelating diseases of the 
nervous system (Chantry et al. J. Neurochem. 1988, 50, 688). 

Because inhibition of p38 leads to inhibition of MMP production, p38 inhibitors 
will be useful in treatment of the above listed diseases. 

20 Inhibitors of p38 are active in animal models of TNFa production, including a 

muirne lipopolysaccharide (LPS) model of TNFa production. Inhibitors of p38 are 
active in a number of standard animal models of inflammatory diseases, including 
carrageenan-induced edema in the rat paw, arachadonic acid-induced edema in the rat 
paw, arachadonic acid-induced peritonitis in the mouse, fetal rat long bone resorption, 

25 murine type II collagen-induced arthritis, and Fruend's adjuvant-induced arthritis in the 
rat. Thus, inhibitors of p38 will be useful in treating diseases mediated by one or more of 
the above-mentioned cytokines and/or proteolytic enzymes. 

The need for new therapies is especially important in the case of arthritic 
diseases. The primary disabling effect of osteoarthritis, rheumatoid . arthritis and septic 

30 arthritis is the progressive loss of articular cartilage and thereby normal joint function. 
No marketed pharmaceutical agent is able to prevent or slow this cartilage loss, although 



5 



WO 02/085859 



PCT/US02/12064 



nonsteroidal antiinflammatory drugs (NSAIDs) have been given to control pain and 
swelling. The end result of these diseases is total loss of joint function which is only 
treatable by joint replacement surgery. P38 inhibitors will halt or reverse the progression 
. of cartilage loss and obviate or delay surgical intervention. 
5 Several patents have appeared claiming polyarylimidazoles and/or compounds 

containing polyarylimidazoles as inhibitors of p38 (for example, Lee et al. WO 95/07922; 
Adams et al. WO 95/02591; Adams et al. WO 95/13067; Adams et al. WO 95/31451). It 
has been reported that arylimidazoles complex to the ferric form of cytochrome P450 cam 
(Harris et al. Mol Eng. 1995, 5, 143, and references therein), causing concern that these 
10 compounds may display structure-related toxicity (Howard-Martin et al. Toxicol. Pathol. 
1987, 15, 369). Therefore, there remains a need for improved p38 inhibitors. 

Summary of the Invention 

This invention provides compoimds, generally described as heteroaryl ureas 

15 containing nitrogen hetero atoms, including pyridine, quinoline and isoquinoline. ureas, 
which inhibit p38 mediated events and thus inhibit the production of cytokines (such as 
TNFa, IL-1 and IL-8) and proteolytic enzymes (such as MMP-1 and MMP-3). The 
invention also provides compositions which contain heteroaryl ureas and a method of 
treating a cytokine mediated disease state in humans or mammals with heteroaryl ureas, 

20 wherein the cytokine is one whose production is affected by p38. Examples of such 
cytokines include, but are not limited to TNFa, EL-l and EL-8. The invention also 
provides a method of treating a protease mediated disease state, in.humans or mammals, 
wherein the protease is one whose production is affected by p38, e.g. disease states 
mediated by one or more cytokines or proteolytic enzymes produced and/or activated by 

25 a p38 mediated process. Examples of such proteases include, but are not limited to 
collagenase (MMP-1) and stromelysin (MMP-3). 

Accordingly, these compounds are useful therapeutic agents for such acute and 
chronic inflammatory and/or immunomodulatory diseases as rheumatoid arthritis, 
osteoarthritis, septic arthritis, rheumatic fever, bone resorption, postmenopausal 

30 osteoperosis, sepsis, gram negative sepsis, septic shock, endotoxic shock, toxic shock 
syndrome, systemic inflammatory response syndrome, inflammatory bowel diseases 



6 



WO 02/085859 



PCT/US02/12064 



including Crohn's disease and ulcerative colitis, Jarisch-Herxheimer reactions, asthma, 
adult respiratory distress syndrome, acute pulmonary fibrotic diseases, pulmonary 
sarcoidosis, allergic respiratory diseases, silicosis, coal worker's pneumoconiosis, 
alveolar injury, hepatic failure, liver disease during acute inflammation, severe alcoholic 
5 hepatitis, malaria including Plasmodium falciparum malaria and cerebral malaria, non- 
insulin-dependent diabetes mellitus (NTJDDM), congestive heart failure, damage 
following heart disease, atherosclerosis, Alzheimer's disease, acute encephalitis, brain 
injury, multiple sclerosis including demyelation and oligodendrocyte loss in multiple 
sclerosis, advanced cancer, lymphoid malignancies, tumor metastasis, pancreatitis, 

10 including systemic complications in acute pancreatitis, impaired wound healing in 
infection, inflammation and cancer, periodontal diseases, corneal ulceration, proteinuria, 
myelodysplastic syndromes, systemic lupus erythematosus, biliary cirrhosis, bowel 
necrosis, psoriasis, radiation injury, toxicity following administration of monoclonal 
antibodies such as OKT3, host-versus-graft reactions including ischemia reperfusion 

15 . injury and allograft rejections including kidney, liver, heart, and skin allograft rejections, 
lung allograft rejection including chronic lung allograft rejection (obliterative bronchitis) 
as well as complications due to total hip replacement, and infectious diseases including 
tuberculosis, Helicobacter pylori infection during peptic ulcer disease, Chaga's disease 
resulting from Trypanosoma cruzi infection, effects of Shiga-like toxin resulting from E. 

20 coli infection, effects of enterotoxin A resulting from Staphylococcus infection, 
meningococcal infection, and infections from Borrelia burgdorferi, Treponema pallidum, 
cytomegalovirus, influenza virus, Theiler's encephalomyelitis, virus, and the human 
immunodeficiency virus (HIV). 

The present invention, therefore, provides hetaryl urea compounds containing 

25 nitrogen hetero-atoms, and compositions which comprise hetaryl urea compounds 
containing nitrogen heteroatoms and a method for treating of p38-mediated disease states 
in humans or mammals, e.g., disease states mediated by one or more cytokines or 
proteolytic enzymes produced and/or activated by a p38 mediated process. In these 
methods a compound of formula I, or a pharmaceutically acceptable salt thereof, is 

30 administered, 



7 



WO 02/085859 



PCT/US02/12064 



A-D-B (I). 

In formula I, 

D is -NH-C(0)-NH-, 

A is a substituted or unsubstituted pyridyl, quinolinyl or isoquinoliyl group, 

B is a substituted or unsubstituted, up to tricyclic aryl or heteroaryl moiety of up 
to 50 carbon atoms with a cyclic structure bound directly to D containing at least 5 
members with 0-4 members of the group consisting of nitrogen, oxygen and sulfur. 

The moiety B is preferably either a substituted or unsubstituted bridged cyclic 
structure of up to 30 carbon atoms of the formula -L-(ML') q , a substituted or 
unsubstituted 6 member cyclic aryl moiety or hetaryl moiety or a substituted or 
unsubstituted 2-3 fused ring structure (aryl, hetaryl or both). For Example, B can be 
phenyl, substituted phenyl, napthyl substituted napthyl, pyridinyl, substituted pyridinyl, 
pyrirnidinyl, substituted pyrimidinyl, quinolinyl, substituted quinolinyl, isoqxiinolinyl, 
substituted isoquinolinyl or of the formula -L(ML l ) q . 

L in the formula -L(ML') q is a 5 or 6 membered cyclic structure bond directly to 
D, L 1 is a cyclic moiety of at least 5 members, 

M is a bridging group having at least one atom and q is an integer of 1-3. 

Each cyclic structure of L and L 1 contains from 0-4 members of the group 
consisting of N, O and S. 

The substituents for the groups of A are preferably selected from the group 
consisting of halogen, up to per-halo, and Wn, where n is 0-3 and each W is 
independently selected from the group consisting of Ci-io alkyl, Cho alkoxy, C3.10 
cycloalkyl having at least five cyclic members and 0-3 heteroatoms, C2-10 alkenyl, C1-10 
alkenoyl, substituted Cmo alkyl, substituted Ci-10 alkoxy, a substituted C3,io cycloalkyl 
having at least 5 cyclic members and 0-3 heteroatoms selected from N, S and O; 
substituted C2-10 alkenyl, substituted Q. 10 alkenoyl, C6-C14 aryl, C7-C24 alkaryl, C7 -C24 



WO 02/085859 



PCT/US02/12064 



aralkyl, C3-C12 hetaryl having at least 5 cyclic members and 1-3 heteroatoms selected 
from O, N and S, C4-C23 alkheteroaryl having at least 5 cyclic members and 1-3 
heteroatoms selected from O, N and S, substituted Q-C14 aryl, substituted C3-C12 hetaryl 
having at least 5 members and 1-3 heteroatoms selected from O, N and S, substituted C 7 - 
C 2 4 aralkyl, substituted C7-C24 alkaryl, substituted C4-C23 alkheteroaryl having at least 5 
cyclic members and 1-3 heteroatoms selected from O, N and S; -CN, -C0 2 R 7 , - 
C(0)NR 7 R 7 ', -C(0)-R 7 , -N0 2 , -OR 7 , -SR 7 , -NR 7 R 7 ', -NR 7 C(0)OR 7 ', -NR 7 C(0)R 7 ', with 
each R 7 and R 7 independently selected from hydrogen, Cmo alkyl, Cmo alkoxy, C 2 -io 
alkenyl, Ci- 10 alkenoyl, up to per halosubstituted C M0 alkyl, up to per halosubstituted Ci- 
10 allcoxy, up to per halosubstituted C2-10 alkenyl and up to per halosubstituted C1-10 
alkenoyl, C3-C10 cycloalkyl having at least 5 cyclic members and 0-3 heteroatoms 
selected from O, S and N, C6-C14 aryl, C3-C10 hetaryl having at least 5 cyclic members 
and 0-3 heteroatoms selected from O, S and N, up to per halosubstituted C3-C10 
cycloalkyl having at least 6 cyclic members and 0-3 heteroatoms selected from O, S and 
N, up to per halo substituted C6-C14 aryl, and. up to per halo substituted C3-C10 hetaryl 
having at least 6 cyclic members and 0-3 heteroatoms selected from O, S and N. 

Where W is a substituted group, it is substituted by halogen, up to per halo, or by 
one or more substituents independently selected from the group consiting of -CN, 
-C0 2 R 7 , -C(0)NR 7 R 7 ", -C(0)-R 7 , -N0 2 , -OR 7 , -SR 7 , -NR 7 R 7 ', -NR 7 C(0)OR 7 ', - 
NR 7 C(0)R 7 with each R 7 and R 7 independently as defined above. 

Where B, is substituted, the substituents are selected from the group consisting of 
halogen, up to per-halo, and J n , where n is 0-3'ahd"eacH J is independently selected from 
the group consisting of -CN, -C0 2 R 7 , -C(0)NR 7 R 7 ', -C(0)-R 7 , -N0 2 , -OR 7 , -SR 7 , - 
NR 7 R 7 ', -NR 7 C(0)OR 7 ', -NR 7 C(0)R 7 ', with each R 7 and R 7 ' independently as defined 
above , Cmo alkyl, Cmo alkoxy, C3.10 cycloalkyl having at least five cyclic members and 
0-3 heteroatoms, C2-10 alkenyl, Cmo alkenoyl,- C 6 -i4 aryl, C3.12 hetaryl having at least five 
cyclic members and 1-3 heteroatoms selected from N, S and O, C 7 - 24 aralkyl, C7-24 
alkaryl, C4-C 2 3 alkheteroaryl having at least 5 cyclic members and 1-3 heteroatoms 
selected from O, N and S, substituted Cmo alkyl, substituted Cmo alkoxy, substituted C 3 _ 
10 cycloalkyl having at least five cyclic members and 0-3 heteroatoms selected from N, S 
and O, substituted C2-10 alkenyl substituted C M o alkenoyl, substituted -Cu aryl, 



WO 02/085859 



PCT/US02/12064 



substituted C3-12 hetaryl having at least five cyclic members and 1-3 hetero atoms selected 
from N, S and O, substituted C7-24 alkaryl , substituted C7-C24 aralkyl substituted C4-C23 
alkheteroaryl having at least 5 cyclic members and 1-3 heteroatoms selected from O, N 
and S, and -Q-Ar. 

Where J is a substituted group, it is substituted by halogen, up to per halo, or by . 
one or more substituents independently selected from the group consisting of -CN, - 
CO2R 7 , -C(0)-R 7 , -C(0)NR 7 R 7 ', -OR 7 , -SR 7 , -NR 7 R 7 ', -N0 2 , -NR 7 C(0)R 7 ', and - 
NR 7 C(0)OR 7 ' ; with each R 7 and R 7 independently as defined above for W. 

Where J is -Q-Ar, Q is preferably a single bond, -O-, -S-, -N(R 7 )-, -(CH 2 ) m -, - 
C(O)-, -CH(OH)-, -(CH 2 ) m O-, -(CH 2 ) m S-, -(CH 2 ) m N(R 7 )-, -0(CH 2 ) m - ,-CHX a -, -CX a 2 -, - 
S-(CH2) m - and -N(R 7 )(CH 2 ) m -, where m= 1-3, and X a is halogen and 

Ar is a 5- or 6-member aromatic structure. This aromatic structure of Ar 

a) contains 0-2 members selected from the group consisting of nitrogen, oxygen 
and sulfur, 

b) is optionally substituted by halogen, up to per-halo, and 

c) is optionally substituted by Z nl , wherein nl is 0 to 3 and each Z is 
independently selected from the group consisting of -CN, -N0 2 , -OR 7 , - SR 7 , 
-NR 7 R 7 ', -NR 7 C(0)0R 7 ', -NR 7 C(0)R 7 ', with each R 7 and R 7 ' independently 
as defined above for W, Gi.io-alkyL : C1.10 alkoxy, C 2 .io alkenyl and Cmo 
alkenoyl halo substituted Ci-io alkyl up to per halo, halo substituted Cmo 
alkoxy up to per halo, halosubstituted C2-10 alkenyl up to per halo and 
halosubstituted C1.10 alkenoyl up to per halo. 

Where A is a substituted pyridyl, substituted quinolinyl or isoquinolinyl group, A 
is preferably substituted 1 to 3 times by 1 or more substituents selected from the group 
consisting of — CN, halogen, Q-C10 alkyl, C1-C10 alkoxy, -OH, up to per halo substituted 
C1-C10 alkyl, up to per halo substituted C1-C10 alkoxy or phenyl substituted by halogen up 
to per halo. 



10 



WO 02/085859 



PCT/US02/12064 



Where B is -L^ML 1 ^, L 1 can be substituted by the substituents -C(0)R a , - 
C(NR a )R b , -C(0)NR a R b , -S0 2 NR a R b , -and -S0 2 R a wherein each R a and R b are 
independently hydrogen or a carbon based moiety of up to 24 carbon atoms, optionally 
containing heteroatoms selected from N, S and O, and optionally substituted by halogen. 

5 R a and R b preferably are each, independently, Cmo alkyl, Cmo alkoxy, C 3 .i 0 

cycloalkyl having at least 5 cyclic members and 0-3 heteroatoms selected from N, S and 
O, C2-10 alkenyl, Cwo alkenoyl, Ce-i4 aryl, C3-12 hetaryl having 1-3 heteroatoms selected 
from N, S and O, C7.24 aralkyl, C7.24 alkaryl, substituted Cmo alkyl, substituted Cmo 
alkoxy, substituted C3-10 cycloalkyl having at least 5 cyclic members and 0-3 heteroatoms 

10 selected from N, S and O, substituted C2-10 alkenyl, substituted Cmo alkenoyl, substituted 
C6 -C14 aryl, substituted C3-12 hetaryl having at least 5 ' cyclic members and 1-3 
heteroatoms selected from N, S and O, substituted C7.24 alkaryl or substituted C7-C24 
aralkyl. Where R a and/or R b are a substituted group, they are substituted by halogen up 
to per halo hydroxy, Cmo alkyl, C3.12 cycloalkyl having 0-3 heteroatoms selected from O, 

15 S and N, C3.12 hetaryl having 1-3 heteroatoms selected from N, S and O, Cmo alkoxy, C6- 
12 aryl, C1-6 halo substituted alkyl up to per halo alkyl, C6-C12 halo substituted aryl up to 
per halo aryl, C3-C12 halo substituted cycloalkyl having 0-3 heteroatoms selected fromN, 
S and O, up to per halo cycloalkyl, halo substituted C3-C12 hetaryl up to per halo 
heteraryl, halo substituted C7-C24 aralkyl up to per halo aralkyl, halo substituted C7-C24 

20 alkaryl up to per halo alkaryl, and -C(0)R g . 

R a and R b can also be 

-OSi(Rf)3 where Rf is hydrogen or a carbon based moiety of up to 24 
carbon atoms optionally containing heteroatoms selected from N, S and O and optionally 
substituted by halogen, hydroxy and carbon based substituents of up to 24 carbon atoms, 
25 which optionally contain heteroatoms selected from N, S and O and are optionally 
substituted by halogen; or 

b) 'bound together to form a 5-7 member heterocyclic structure of 1-3 
heteroatoms selected from N, S and O, or a substituted 5-7 member heterocyclic 
structure of 1-3 heteroatoms selected from N, S and O substituted by halogen, hydroxy 



11 



WO 02/085859 



PCT/US02/12064 



or carbon based substituents of up to 24 carbon atoms, which optionally contain 
heteroatoms selected from N, S and O and are optionally substituted by halogen; or 

c) one of R a or R b can be -C(O)-, a C1-C5 divalent alkylene group or a 
substituted C1-C5 divalent alkylene group bound to the moiety L to form a cyclic 
5 structure with at least 5 members, wherein the substituents of the substituted C1-C5 

divalent alkylene group are selected from the group consisting of halogen, hydroxy, and 
carbon based substituents of up to 24 carbon atoms, which optionally contain 
heteroatoms selected from N, S and O and are optionally substituted by halogen. 

The carbon based moieties of R f and the substituents on R a and R b include C1-10 
10 'alkyl, Ci-10 alkyl, Clio alkoxy, C3-C10 cycloalkyl having 0-3 heteroatoms selected from 
O, S and N, Ce-i2 aryl, C3-C12 hetaryl having 1-3 heteroatoms selected from O, S and N, 
C7-24 aralkyl, substituted Clio alkyl, substituted C1-C10 alkoxy, substituted C3-Ci2- 
cycloalkyl having 0-3 heteroatoms selected from O, S and N, substituted C3-C12 heteraryl 
having 1-3 heteroatoms selected from O, S, and N, substituted C5.12 aryl, and substituted 
15 C7.24 alkaryl, where Rf is a substituted group it is substituted halogen up to per halo, 

hydroxy, Clio alkyl, C3-12 cycloalkyl having 0-3 heteroatoms selected from O, S and N, 
C3-12 hetaryl having 1-3 heteroatoms selected fromN, S and O, Ci-io alkoxy, Cg-u aryl, 
C y .-C24 alkaryl, C7-C24 aralkyl, Ci-6 halo substituted alkyl up to per halo alkyl, C6-C12 
halo substituted aryl up to per halo aryl, C3-C12 halo substituted cycloalkyl having 0-3 
20 heteroatoms selected from N, S and O, up to per halo cycloalkyl, halo substituted C3-C12 
hetaryl up to per halo heteraryl, halo substituted C7-C24 aralkyl up to per halo aralkyl, 
halo substituted C7-C24 alkaryl up to per halo alkaryl, and -C(0)R g ; 

where R g is Clio alkyl; -CN, -C0 2 Rd, -ORd, -SRd, -N0 2 , -C(O) Re, -NRaRe, -NR d 
C(0)ORe and -NRj C(0)Re, and Rd and Re are independently selected from the group 
25 consisting of hydrogen, Cuo, alkyl, Clio alkoxy, C3-10 cycloalkyl having 0-3 heteroatoms 
selected from O, N and S, C6-12 aryl, C3-C12 hetaryl with 1-3 heteroatoms selected from 
O, N and S and C7-C24 aralkyl, C7-C24 alkaryl, up to per halo substituted C1-C10 alkyl, up 
to per halo substituted C3-C10 cycloalkyl having 0-3 heteroatoms selected from O, N and 
S, up to per halo substituted C6-C14 aryl, up to per halo substituted C3-C12 hetaryl having 



12 



WO 02/085859 



PCT/US02/12064 



1-3 heteroatoms selected from O, N, and S, halo substituted C7-C 24 allcaryl up to per halo 
alkaryl, and up to per halo substituted C7-C24 aralkyl. 

The bridging group M in the formula -^(ML 1 ),, for B is preferably selected from 
the group consisting of-O-, -S-, -N(R 7 )-, -(CH 2 ) m -, -C(0>, -CH(OH)-, -(CH 2 ) m O, 
-( CH 2 ) ra S-, -( CH 2 ) m N(R 7 )-, -0(CH 2 ) m - CHX\ -CXV, -S-(CH 2 ) m -, -N(R 7 )(CH 2 ) m - and 
-CR a R b - where m=l-3, X a is hydrogen, R 7 , R a and R b are as defined above and q is 1. 
More preferably, M is -0-, -CH 2 -, -S-, -NH-, -C(O)-, -0-CH 2 - and -CH3-O-. 

The moieties L and L 1 in the formula — L-(ML 1 ) q for B are typically each, 
independently, a substituted aryl moiety having at least 6 cyclic members, a substituted 
heterocyclic moiety having at least 5 cyclic members, an unsubstituted aryl moiety 
having at least 6 cyclic members or an unsubstituted heterocyclic moiety having at least 5 
cyclic members. The heterocyclic and hetaryl moietes for L and L' typically have 1 to 4 
members selected from the group of hetero atoms consisting of nitrogen, oxygen and 
sulfur with the balance of the hetaryl or heterocyclic moiety being carbon. More typical 
moieties for L 1 and L are selected from the group consisting of tbiophene, substituted 
thiophene, phenyl, substituted phenyl, pyridinyl, substituted pyridinyl, pyrimidinyl and 
substituted pyrimidinyl. 

Where L is substituted or L 1 is additionally substituted, the substituents are 
selected from the group consisting of halogen, up to per-halo, and Jn where n is 0-3, and J 
is as defined above. 

Preferred compounds of Formula I include those wherein the cyclic structures of 
B and L bound directly to D are not substituted in the ortho position by-OH. 

The invention provides hetaryl compounds containing nitrogen hetero-atoms of 
formula II 

A'-D-B'OI), 

wherein D is as defined above for formula I and A' is either a substituted t- 
butylpyridyl, unsubstituted t-butylpyridyl, substituted (trifluoromethyl)pyridyl, 
unsubstituted (trifluoromethyl)pyridyl, substituted isopropylpyridyl, unsubstituted 
sopropylpyridyl, substituted " (2-methylr2-butyl)pyridyl, unsubstituted (2-mefhyl-2- 



13 



WO 02/085859 



PCT/US02/12064 



butyl)pyridyl, substituted (3-ethyl-3-pentyl)pyridyl, unsubstituted (3-ethyl-3- 
pentyl)pyridyl, substituted isoquinolinyl, unsubstituted isoquinolinyl or unsubstituted 
quinolinyl. 

B' can be a substituted or unsubstituted 6 member cyclic aryl ring, at least a 5 
member heterocylic ring or from 2-3 fused rings of up to 30 carbon atoms (aryl hetaryl or 
both). 

B' also includes structures of formula EH 



either substituted or unsubstituted, where A' is substituted or \insubstituted t-butylyridyl, 
(trifluoromethyl)pyridyl, isopropylpyridyl, (2-methyl-2-butyl)pyridyl or (3-ethyl-3- 
pentyl)pyridyl. 

B' also includes structures of the formula IV 



either substituted or unsubstituted where A' is a substituted isoquinolinyl, unsubsituted 
isoquinolinyl or unsubstituted quinolinyl group. 

The substituents for the substituted groups of A' are as defined for A. Preferred 
substituents are selected from the group consisting of up to per halo substituted C]_io 
alkoxy, up to per halo substituted Cmo alkyl and C3.10 heteroyclic moieties comprising 1 
to 2 heteroatoms selected from the group consisting of nitrogen, oxygen and sulfur. 




(Ill) 




N 



(IV) 



14 



WO 02/085859 



PCT/US02/12064 



Where B' is a 6 member cyclic arylring, at least a 5 member heterocyclic ring or 
2-3 fused rings of up to 30 carbon atoms, the substituents for B' are selected from the 
group consisting of halogen, up to per-halo-, and J 1 !, where n=0-3 and each J 1 is 
independently selected from the group consisting of -CN, halogen, OH, -C0 2 R 7 ,- 
5 C(0)NR 7 R 7 ', -C(0)-R 7 , N0 2 , OR 7 , SR 7 , NR 7 R 7 ', NR 7 C(0)OR 7 ', NR 7 C(0)R 7 ', Ci.i Q alkyi, 
Ci-io alkoxy, C2-10 alkenyl, Ci-10 alkenoyl, substituted Ci-10 alkyl, substituted Ci.iq alkoxy, 
substituted C2-10 alkenyl, and substituted Cmo alkenoyl, with R 7 and R 7 are, 
independently, as defined above. 

When B' is of formula EH or IV, the substituents are selected from the group 

10 consisting of-CN, halogen, OH, -N0 2 , -OR 7 , -SR 7 , -NR 7 R 7 ', -NR 7 C(0)OR 7 ', C M0 alkyl, 
Ci-10 alkoxy, C 2 -io alkenyl, Ci-io alkenoyl, substituted Ci-10 alkoxy, substituted • C2-10 
alkenyl and substituted alkenoyl Ci-10, withR 7 andR 7 as defined above. 

R a and R b preferably are each, independently, Ci-10 alkyi, Ci-io alkoxy,' C3-10 
cycloalkyl having at least 5 cyclic members and 0-3 heteroatoms, C2-10 alkenyl, Ci-io 

15 alkenoyl, C6-12 aryl, C3.12 hetaryl having at least 5 cyclic members and 1-3 heteroatoms 
selected from N, S and O, C7J24 aralkyl, C7-24 alkaryl, substituted Ci_i 0 alkyl, ' substituted 
Ci-io alkoxy, substituted C3.10 cycloalkyl having at least 5 cyclic members and 0-3 
heteroatoms selected from N, S and O, substituted C2-10 alkenyl, substituted Ci-10 
alkenoyl, substituted Ce -Cu aryl, substituted C3-12 hetaryl having at least 5 cyclic 

20 members and 1-3 heteroatoms selected from N, S and O, substituted C7-24 alkaryl or 
substituted C 7 -C 2 4 aralkyl, where R a and/or R b are a substituted group, they are preferably 
substituted by halogen up to per halo. 

Where B 5 is' a substituted pyridyl, substituted quinolinyl or isoquinolihyl group, 
B' is preferably substituted 1 to 3 times by 1 or more substituents selected from the group 
25 consisting of -CN, halogen, C1-C10 alkyl, C1-C10 alkoxy, -OH, up to per halo substituted 
C1-C10 alkyl, up to per halo substituted C1-C10 alkoxy or phenyl substituted by halogen up 
to per halo. 

In Formulae I, and II suitable hetaryl groups include, but are not limited to, 4-12 
30 carbon- atom aromatic rings or ring systems containing 1-3 rings, at least one of which is 
aromatic, in which one or more, e.g., 1-4 carbon atoms in one or more of the rings can be 

15 



WO 02/085859 



PCT/US02/12064 



replaced by oxygen, nitrogen or sulfur atoms. Each ring typically has 5-7 member atoms. 
For example, B can be 2- or 3-furyl, 2- or 3-thienyl, 2- or 4-triazinyl, 1-, 2- or 3-pyrrolyl, 
1-, 2-, 4- or 5-irnidazolyl, 1-, 3-, 4- or 5-pyrazolyl, 2-, 4- or 5-oxazolyl, 3-, 4- or 5- 
isoxazolyl, 2-, 4- or 5-thiazolyl, 3-, 4- or 5-isothiazolyl, 2-, 3- or 4-pyridyl, 2-, 4-, 5- or 6- 
pyrimidinyl, 1,2,3-triazol-l-, -4- or-5-yl, 1,2,4-triazol-l-, -3- or-5-yl, 1- or 5-tetrazolyl, 

1.2.3- oxadiazol-4- or-5-yl, l,2,4-oxadiazol-3- or-5-yl, l,3,4-thiadiazol-2- or-5-yl, 

1.2.4- oxadiazol-3- or-5-yl, l,3,4-thiadiazol-2- or-5-yl, l,3,4-tbiadiazol-3- or-5-yl, 
l,2,3-thiadiazol-4- or-5-yl, 2-, 3- 4-, 5- or 6-2H-thiopyranyl, 2-, 3- or 4-4H-thiopyranyl, 

3- or 4-pyridazinyl, pyrazinyl, 2-, 3-, 4-, 5-, 6- or 7-benzofuryl, 2-, 3-, 4-, 5-, 6- or 7- 
benzothienyl, 1-, 2-, 3-, 4-, 5-, 6- or 7-indolyl, 1-, 2-, 4- or 5-benzimidazolyl, 1-, 3-, 4-, 5- 
, 6- or 7-benzopyrazolyl, 2-, 4-, 5-, 6- or 7-benzoxazolyl, 3-, 4-, 5- 6- or 7-benzisoxazolyl, 
1-, 3-, 4-, 5-, 6- or 7-benzothiazolyl, 2-, 4-, 5-, 6- or 7-benzisothiazolyl, 2-, 4-, 5-, 6- or 7- 
benz-l,3-oxadiazolyl, 2-, 3-, 4-, 5-, 6-, 7~ or 8-quinolinyl, 1-, 3-, 4-, 5- 6-, 7-, 8- 
isoquinolinyl, 1-, 2-, 3-, 4- or 9-carbazolyl, 1-, 2-, 3-, 4-, 5-, 6-, 7-, 8- or 9-acridinyl, or 2-, 

4- , 5-, 6-, 7- or 8-quinazolinyl, or additionally optionally substituted phenyl, 2- or 3-' 
thienyl, 1,3,4-thiadiazolyl, 3-pyrryl, 3-pyrazolyl, 2-thiazolyl or 5-thiazolyl, etc. For 
example, B can be 4-methyl-phenyl, 5-methyl-2-thienyl, 4-methyl-2-thienyl, l-methyl-3- 
pyrryl, l-methyl-3-pyrazolyl, 5-methyl-2-thiazolyl or 5-methyl-l,2,4-thiadiazol-2-yl. 

Suitable alkyl groups and alkyl portions of groups, e.g., alkoxy, etc. throughout 
include methyl, ethyl, propyl, butyl, etc., including all straight-chain and branched 
isomers such -as, isopropyl, isobutyl, sec-butyl, rert-butyl, etc. 

Suitable aryl groups which do not contain heteroatoms include, for example, 
phenyl and 1 - and 2-naphthyl. 

The term "cycloalkyl", as used herein, refers to cyclic structures with or without 
alkyl substituents such that, for example, "C 4 cycloalkyl" includes methyl substituted 
cyclopropyl groups as well as cyclobutyl groups. The term "cycloalkyl", as used herein 
also includes saturated heterocyclic groups. 



16 



WO 02/085859 



PCT/US02/12064 



Suitable halogen groups include F, CI, Br, and/or I, from one to per-substitution 
(i.e. all H atoms on a group replaced by a halogen atom) being possible where an alkyl 
group is substituted by halogen, mixed substitution of halogen atom types also being 
possible on a given moiety. 

5 

The present invention is also directed to pharmaceutically acceptable salts of 
formula H Suitable pharmaceutically acceptable salts are well known to those skilled in 
the art and include basic salts of inorganic and organic acids, such as hydrochloric acid, 
hydrobromic acid, sulphuric acid, phosphoric acid, methanesulphonic acid, 

10 trifluoromethanesulfonic acid, benzenesulphonic acid^-toluenesulfonic acid, 1- 

naphthalenesulfonic acid, 2-naphthalenesulfonic acid, acetic acid, trifluoroacetic acid, 
malic acid, tartaric acid, citric acid, lactic acid, oxalic acid, succinic acid, fumaric acid, 
maleic acid, benzoic acid, salicylic acid, phenylacetic acid, and mandelic acid, in 
addition, pharmaceutically acceptable salts include acid salts of inorganic bases, such as 

15 salts containing alkaline cations (e.g., Li + Na + or K + ), alkaline earth cations (e.g., Mg +2 , 
Ca +2 or Ba +2 ), the ammonium cation, as well as acid salts of organic bases, including 
aliphatic and aromatic substituted ammonium, and quaternary ammonium cations, such 
as those arising from protonation or peralkylation of triethylamine, N,N-dieihylamme, 
A^iV"-dicyclohexylamme, lysine, pyridine, MTV-dimethylaminopyridine (DMAP), 1,4- 

20 diazabiclo[2.2.2]octane'(DABCO), l,5-diazabicyclo[4.3.0]non-5-ene (DBN) and 1,8- 
diazabicyclo[5.4.0]undec-7-ene (DBU). 

A number of the compounds of Formulae I and 1 1 possess asymmetric carbons and can 
therefore exist in racemic and optically active forms. Methods of separation of 
25 enantiomeric and diastereomeric mixtures are well known to one skilled in the art. The 
present invention encompasses any racemic or optically active form of compounds 
described in Formula II which possess progesterone receptor binding activity. 



17 



WO 02/085859 



PCT/US02/12064 



General Preparative Methods 

The compounds of Formulae I and II may be prepared by the use of known chemical 
reactions and procedures, some from starting materials which are commercially available. 
5 Nevertheless, general preparative methods are provided below to aid one skilled in the art 
in synthesizing these compounds, with more detailed examples being provided in the 
Experimental section which follows. 

Substituted and unsubstituted aminoquinolines, aminoisoquinolines and aminopyridines 
may be prepared using standard methods (see, for example: A.R. Katritzky et al. (Eds.). 
10 Comprehensive Heterocyclic Chemistry II, Vol. 5. M.H. Palmer. Heterocyclic 

Compounds; Arnold Ltd., London (1967). C.K. Esser et al. WO 96/18616. C.J. Donahue 
et al. Inorg. Chem. 30, 1991, 1588. E. Cho et al. WO 98/00402. A. Cordi et al. Bioorg. 
Med. Chem.. 3, 1995, 129). In addition, many aminoquinolines, aminoisoquinolines and 
aminopyridines are commercially available. 

15 

Substituted anilines may be generated using standard methods (March. Advanced 
Organic Chemistry, 3 rd Ed.; John Wiley: New York (1985). Larock. Comprehensive 
Organic Transformations; VCH Publishers: New York (1989)). As shown in Scheme I, 
aryl amines are commonly synthesized by reduction of nitroaryls using a metal catalyst, 

20 ' such as Ni, Pd, or Pt, and H 2 or a hydride transfer agent, such as formate, cyclohexadiene, 
or a borohydride (Rylander. Hydrogenation Methods; Academic Press: London, UK 
(1985)). Nitroaryls may also be directly reduced using a strong hydride source, such as 
LiAlH.4 (Seyden-Penne. Reductions by the Alumino- and Borohydrides in Organic 
Synthesis; VCH Publishers: New York (1991)), or using a zero valent metal, such as Fe, 

25 Sn or Ca, often in acidic media. Many methods exist for the synthesis of nitroaryls 

(March. Advanced Organic Chemistry, 3 rd Ed.; John Wiley: New York (1985). Larock. 
Comprehensive Organic Transformations; VCH Publishers: New York (1989)). 



18 



WO 02/085859 



PCT/US02/12064 



H 2 / catalyst - 
^ (eg. Ni, Pd, Pt) \^ 

ArN0 2 ^ >► ArNH 2 

\ M(0) 

(eg. Fe, Sn, Ca) 
Scheme I Reduction of Nitroaryls to Aryl Amines 

Nitroaryis are commonly formed by electrophilic aromatic nitration using HNO3, or an 
alternative N02 + source. Nitroaryls may be further elaborated prior to reduction. Thus, 
nitroaryls sxibstituted with 

HNO3 

Ar-H >- ArN0 2 

potential leaving groups (eg. F, CI, Br, etc.) may undergo substitution reactions on 
treatment with nucleophiles, such as thiolate (exemplified in Scheme H) or phenoxide. 
Nitroaryls may also undergo Ullman-type coupling reactions (Scheme II). 




Scheme II Selected Nucleophilic Aromatic Substitution using Nitroaryls 
Nitroaryls may also undergo transition metal mediated cross coupling reactions. For 
example, nitroaryl electrophiles, such as nitroaryl bromides, iodides or triflates, undergo 
palladium mediated cross coupling reactions with aryl nucleophiles, such as arylboronic 
acids (Suzuki reactions, exemplified below), aryltins (Stille reactions) or arylzincs 
(Negishi reaction) to afford the biaryl (5). 



19 



WO 02/085859 



PCT/US02/12064 



0 2 N 



ArB(OR') 2 



0 2 N 




Ar 



R 



Pd(0) 



R 



4 



5 



Either nitroaryls or anilines may be converted into the corresponding arenesulfonyl 
chloride (7) on treatment with chlorosulfonic acid. Reaction of the sulfonyl chloride with 
a fluoride source, such as KF then affords sulfonyl fluoride (8). Reaction of sulfonyl 



as tris(dimethylamino)sulfonium difluorotrimethylsiliconate (TASF) leads to the 
corresponding trifluoromethylsulfone (9). Alternatively, sulfonyl chloride 7 may be 
reduced to the arenethiol (10), for example with zinc amalgum. Reaction of thiol 10 with 
CHC1F 2 in the presence of base gives the difluoromethyl mercaptan (11), which maybe 
oxidized to the sulfone (12) with any of a variety of oxidants, including Cr03-acetic 
anhydride (Sedova et al. Zh. Org. Khim. 1970, 6, (568). 



fluoride 8 with trimethylsilyl trifluoromethane in the presence of a fluoride source, such 



20 



WO 02/085859 



PCT/US02/12064 




Scheme HI Selected Methods of Fluorinated Aryl Sulfone Synthesis 
As shown in Scheme IV, non-symmetrical urea formation may involve reaction of an 
ary] isocyanate (14) with an aryl amine (13). The heteroary'l isocyanate may be 
5 synthesized from a heteroaryl amine by treatment with phosgene or a phosgene 
equivalent, such as trichloromethyl chloroformate (diphosgene), bis(trichloromethyl) 
carbonate (triphosgene), or A^A^'-carbonyldiimidazole (GDI). The isocyanate may also 
be derived from a heterocyclic carboxylic acid derivative, such as an ester, an acid halide 
or an anhydride by a Curtius-type rearrangement. Thus, reaction of acid derivative 16 
10 with an azide source, followed by rearrangement affords the isocyanate. The 
corresponding carboxylic acid (17) may also be subjected to Curtius-type rearrangements 
using diphenylphosphoryl azide (DPP A) or a similar reagent. 



21 



WO 02/085859 



PCT/US02/12064 



Ar 1 — NH 2 13 

COCl 2 

, ' H 2 N— Ar 2 
Ar n -NCO >> 



ArV.,A.„ 



14 




N N 
H H 

15 



Ar 



DP PA 



O 

.,A. 



O 



Ar' X Ar' OH 

16 17 

Scheme IV Selected Methods of Non-Symmetrical Urea Formation 

Finally, ureas may be further manipulated using methods familiar to those skilled in the 
art. 

The invention also includes pharmaceutical compositions including a compound of 
Formula I, and a physiologically acceptable carrier. 

The compounds may be administered orally, dermally, parenterally, by injection, by 
inhalation or spray, or sublingually, rectally or vaginally in dosage unit formulations. The 
term 'administration by injection' includes intravenous, intraarticular, intramuscular, 
subcutaneous and parenteral injections, as well as use of infusion techniques. Dermal 
administration may include topical application or transdermal administration. One or 
more compotmds may be present in association with one or more non-toxic 
pharmaceutically acceptable carriers and if desired other active ingredients. 



Compositions intended for oral use may be prepared according to any suitable method 
known to the art for the manufacture of pharmaceutical compositions. Such 
compositions may contain one or more agents selected from the group consisting of 
diluents, sweetening agents, flavoring agents, coloring agents and preserving agents in 
order to provide palatable preparations. Tablets contain the active ingredient in 



22 



WO 02/085859 



PCT/US02/12064 



admixture with non-toxic pharmaceutically acceptable excipients which are suitable for 
the manufacture of tablets. These excipients may be, for example, inert diluents, such as 
calcium carbonate, sodium carbonate, lactose, calcium phosphate or sodium phosphate; 
granulating and disintegrating agents, for example, corn starch, or alginic acid; and 
5 binding agents, for example magnesium stearate, stearic acid or talc. The tablets may be 
uncoated or they may be coated by known techniques to delay disintegration and 
adsorption in the gastrointestinal tract and thereby provide a sustained action over a 
longer period. For example, a time delay material such as glyceryl monostearate or 
glyceryl distearate may be employed. These compounds may also be prepared in solid, 
10 rapidly released form. 

Formulations for oral use may also be presented as hard gelatin capsules wherein the 
active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, 
calcium phosphate or kaolin, or as soft gelatin capsules wherein the active ingredient is 
15 mixed with water or an oil medium, for example peanut oil, liquid paraffin or olive oil. 

Aqueous suspensions containing the active materials in admixture with excipients 
suitable for the manufacture of aqueous suspensions may also be used. Such excipients 
are suspending agents, for example sodium carboxymethylcellulose, methylcellulose, 

20 hydroxypropyl-methylcellulose, sodium alginate, polyvinylpyrrolidone, gum tragacanth 
and gum acacia; dispersing or wetting agents may be a naturally-occurring phosphatide, 
for example, lecithin, or condensation products of an alkylene oxide with fatty acids, for 
example polyoxyethylene stearate, or condensation products of ethylene oxide with long 
chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation 

25 products of ethylene oxide with partial esters derived from fatty acids and hexitol such as 
polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with 
partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene 
sorbitan monooleate. The aqueous suspensions may also contain one or more 
preservatives, for example ethyl, or rc-propyl,/?-hydroxybenzoate, one or more coloring 

30 agents, one or more flavoring agents, and one or more sweetening agents, such as sucrose 
or saccharin. 



23 



WO 02/085859 



PCT/US02/12064 



Dispersible powders and granules suitable for preparation of an aqueous suspension by 
the addition of water provide the active ingredient in admixture with a dispersing or 
wetting agent, suspending agent and one or more preservatives. Suitable dispersing or 
wetting agents and suspending agents are exemplified by those already mentioned above. 
Additional excipients, for example, sweetening, flavoring and coloring agents, may also 
be present. 

The compounds may also be in the form of non-aqueous liquid formulations, e.g., oily 
suspensions which may be formulated by suspending the active ingredients in a vegetable 
oil, for example arachis oil, olive oil, sesame oil or peanut oil, or in a mineral oil such as 
liquid paraffin. The oily suspensions may contain a thickening agent, for example 
beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set forth above, 
and flavoring agents may be added to provide palatable oral preparations. These 
compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid. 

Pharmaceutical compositions of the invention may also be in the form of oil-in-water 
emulsions. The oil phase may be a vegetable oil, for example olive oil or arachis oil, or a 
mineral oil, for example liquid paraffin or mixtures of these. Suitable emulsifying agents 
may be naturally-occurring gums, for example gum acacia or gum tragacanth, naturally- 
occurring phosphatides, for example soy bean, lecithin, and esters or partial esters 
derived from fatty acids and hexitol anhydrides, for example sorbitan monooleate, and 
condensation products of the said partial esters with ethylene oxide, for example 
polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening and 
flavoring agents. 

Syrups and elixirs may be formulated with sweetening agents, for example glycerol, 
propylene glycol, sorbitol or sucrose. Such formulations may also contain a demulcent, a 
preservative and flavoring and coloring agents. 



24 



WO 02/085859 



PCT/US02/12064 



The compounds may also be administered in the form of suppositories for rectal or 
vaginal administration of the drug. These compositions can be prepared by mixing the 
drug with a suitable non-irritating excipient which is solid at ordinary temperatures but 
liquid at the rectal or vaginal temperature and will therefore melt in the rectum or vagina 
5 to release the drug. Such materials include cocoa butter and polyethylene glycols. 

Compounds of the invention may also be administered transdermally using methods 
known to those skilled in the art (see, for example: Chien; "Transdermal Controlled • 
Systemic Medications"; Marcel Dekker, Inc.; 1987. Lipp et al. WO94/04157 3Mar94). 

10 For example, a solution or suspension of a compound of Formula I in a suitable volatile 
solvent optionally containing penetration enhancing agents can be combined with 
additional additives known to those skilled in the art, such as matrix materials and 
bacteriocides. After sterilization, the resulting mixture can be formulated following 
known procedures into dosage forms. In addition, on treatment with emulsifying agents 

15 and water, a solution or suspension of a compound of Formula I maybe formulated into a 
lotion or salve. 

Suitable solvents for processing transdermal delivery systems are known to those skilled 
in the art, and include lower alcohols such as ethanol or isopropyl alcohol, lower ketones 

20 such as acetone, lower carboxylic acid esters such as ethyl acetate, polar ethers such as 
tetrahydrofuran, lower hydrocarbons such as hexane, cyclohexane or benzene, or 
halogenated hydrocarbons such as dichlorometbane, chloroform, trichlorotrifluoroethane, 
or trichlorofluoroethane. Suitable solvents may also include mixtures one or more 
materials selected from lower alcohols, lower ketones , lower carboxylic acid esters, 

25 polar ethers, lower hydrocarbons, halogenated hydrocarbons. 

Suitable penetration enhancing materials for transdermal delivery systems are known to 
those skilled in the art, and include, for example, monohydroxy or polyhydroxy alcohols 
such as ethanol, propylene glycol or benzyl alcohol, saturated or unsaturated Cg-Cis fatty 
30 alcohols such as lauryl alcohol or cetyl alcohol, saturated or unsaftirated Cs-Ci8 fatty 

acids such as stearic acid, saturated or unsaturated fatty esters with up to 24 carbons such 



25 



WO 02/085859 



PCT/US02/12064 



as methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl isobutyl tert-butyl or monoglycerin 
esters of acetic acid, capronic acid, lauric acid, myristinic acid, stearic acid, or palmitic 
acid, or diesters of saturated or unsaturated dicarboxylic acids with a total of up to 24 
carbons such as diisopropyl adipate, diisobutyl adipate, diisopropyl sebacate, diisopropyl 
5 maleate, or diisopropyl fumarate. Additional penetration enhancing materials include 

phosphatidyl derivatives such as lecithin or cephalin, terpenes, amides, ketones, ureas and 
their derivatives, and ethers such as dimethyl isosorbid and diethyleneglycol monoethyl 
ether. Suitable penetration enhancing formulations may also include mixtures one or 
more materials selected from monohydroxy or polyhydroxy alcohols, saturated or 
10 unsaturated Cs-Cis fatty alcohols, saturated or unsaturated Cs-Cis fatty acids, saturated or 
unsaturated fatty esters with up to 24 carbons, diesters of saturated or unsaturated 
dicarboxylic acids with a total of up to 24 carbons, phosphatidyl derivatives, terpenes, 
amides, ketones, ureas and their derivatives, and ethers. 

15 Suitable binding materials for transdermal delivery systems are known to those skilled in 
the art and include polyacrylates, silicones, polyurethanes, block polymers, styrene- 
butadiene coploymers, and natural and synthetic rubbers. Cellulose ethers, derivatized 
polyethylenes, and silicates may also be used as matrix components. Additional 
additives, such as viscous resins or oils maybe added to increase the viscosity of the 

20 matrix. 

For all regimens of use disclosed±atemJbr compounds of Formulae I and II, the daily 
oral dosage regimen will preferably be from 0.01 to 200 mg/Kg of total body weight. The 
daily dosage for administration by injection, including intravenous, intramuscular, 

25 subcutaneous and parenteral injections, and use of infusion techniques will preferably be 
from 0.01 to 200 mg/Kg of total body weight. The daily rectal dosage regimen will 
preferably be from 0.01 to 200 mg/Kg of total body weight. The daily vaginal dosage 
regimen will preferably be from 0.01 to 200 mg/Kg of total body weight. These daily 
dosages can be administered incrementally during the day, on a weekly basis on a 

30 biweekly basis or longer periods. Long term dosages typically range from 100-600 



26 



WO 02/085859 



PCT/US02/12064 



mg/kg of total body weight-arid preferably range from 100-400 mg/kg of total body 
weight. 

Dosages for oral, vaginal and rectal administration and administration by injection 
can range from 0.01 mg — 600 mg/kg of total body weight. 

5 

The daily topical dosage regimen will preferably be from 0. 1 to 200 mg 
administered between one to four times daily. The transdermal concentration will 
preferably be that required to maintain a daily dose of from 0.01 to 200 mg/Kg. The 
daily inhalation dosage regimen will preferably be from 0.01 to 10 mg/Kg of total body 
10 weight. 

It will be appreciated by those skilled in the art that the particular method of 
administration will depend on a variety of factors, all of which are considered routinely 
when administering therapeutics. It will also be understood, however, that the specific 

15 dose level for any given patient will depend upon a variety of factors, including, but not 
limited to the activity of the specific compound employed, the age of the patient, the 
body weight of the patient, the general health of the patient, the gender of the patient, the 
diet of the patient, time of administration, route of administration, rate of excretion, drug 
combinations, and the severity of the condition undergoing therapy. It will be further 

20 appreciated by one skilled in the art that the optimal course of treatment, ie., the mode Of 
treatment and the daily or weekly number of doses of a compound of Formulae I or H or 
a pharmaceutically acceptable salt+hereof given, for a defined.number of days, can be 
ascertained by those skilled in the art using conventional treatment tests. 

25 The entire disclosure of all applications, patents and publications cited above and below 
are hereby incorporated by reference, including provisional application Serial No. 
60/115,878 filed January 13, 1999 and non-provisional applications 
Serial No. 09/778,039, filed February 7, 2001, and 
Serial No. 09/257,265, filed February 25, 1999 and 
30 Serial No. 09/425,229, filed October 22, 1999. 



27 



WO 02/085859 



PCT/US02/12064 



The compounds of formulae I and II are producible from known compounds (or from 
starting materials which, in turn, are producible from known compounds), e.g., through 
the general preparative methods shown below. ' The activity of a given compound to 
inhibit raf kinase can be routinely assayed, e.g., according to procedures disclosed below. 
The following examples are for illustrative purposes only and are not intended, nor 
should they be construed to limit the invention in any way. 



28 



WO 02/085859 



PCT/US02/12064 



EXAMPLES 

All reactions were performed in flame-dried or oven-dried glassware under a positive 
pressure of dry argon or dry nitrogen, and were stirred magnetically unless otherwise 
indicated. Sensitive liquids and solutions were transferred via syringe or cannula, and 
5 introduced into reaction vessels through rubber septa. Unless otherwise stated, the term 
'concentration under reduced pressure' refers to use of a Buchi rotary evaporator at 
approximately 15 mrnHg. Unless otherwise stated, the term 'under high vacuum' refers to 
a vacuum of 0.4 —1.0 mmHg. 

10 All temperatures are reported in degrees Celsius (°C). Unless otherwise indicated, all 
parts and percentages are by weight. 

Commercial grade reagents and solvents were used without further purification. iV- 
cyclohexyl-A'''-(methylpolystyrene)carbodiimide was purchased from Calbiochem- 

15 Novabiochem Corp. 5-(Trifluoromethyl)-2-aminopyridine, 3-aminoqunioline, 3- 
aminoisoquinoline, l-(4-methylpiperazinyl)-3-aminoisoquinoline, ethyl 4- 
isocyanatobenzoate, A/-acetyl-4-chloro-2-methoxy-5-(trifluoromethyl)aniline, 4-(4- 
nitrobenzyl)pyridine, 4-phenoxyaniline, 4-(4-methylphenoxy)aniline, 4-(4- 
chlorophenoxy) aniline and 4-chloro-3-(trifluoromethyl)phenyl isocyanate were purchased 

20 and used without further purification. Syntheses of 2-amino-4-ter^butylpyridine (C.K. 
Esser et al. WO 96/18616; CJ. Donahue et al. Inorg. Chem. 30, 1991, 1588), 3-amino-2- 
methoxyquinoline (E. Cho et al. WO 98/00402; A. Cordi et al. EP 542,609; IBID Bioorg. 
Med. Chem.. 3, 1995, 129), 4-(3-carbamoylphenoxy)- 1 -nitrobenzene (K. Dcawa Yakugaku 
Zasshi 79, 1959, 760; Chem. Abstr. 53, 1959, 12761b), 4-[(4- 

25 methoxyphenyl)methylamino]aniline (P. Brermeisen et al. US 3,755,406; IBID US 
3,839,582; IBID DE 1,935,388), 4-(4-pyridylcarbonyl)aniline (M.L. Carmello et al. 
Pestic. Sci. 45, 1995, 227), 3-tert-butylphenyl isocyanate (O. Rohr et al. DE 2,436,108) 
and 2-methoxy-5-(trifluoromethyl)phenyl isocyanate (K. rnukai et al. JP 42,025,067; 
IBID Kogyo Kagaku Zasshi 70, 1967, 491) have, previously been described. 



29 



WO 02/085859 



PCT/US02/12064 



Thin-layer chromatography (TLC) was performed using Whatman pre-coated glass- 
backed silica gel 60 A F-254 250 um plates. Visualization of plates was effected by one 
or more of the following techniques: (a) ultraviolet illumination, (b) exposure to iodine 
vapor, (c) immersion of the plate in a 10% solution of phosphomolybdic acid in ethanol 
5 followed by heating, (d) immersion of the plate in a cerium sulfate solution followed by 
heating, and/or (e) immersion of the plate in an acidic ethanol solution of 2,4- 
dinitrophenylhydrazine followed by heating. Column chromatography (flash 
chromatography) was performed using 230-400 mesh EM Science® silica gel. 

10 Melting points (mp) were determined using a Thomas-Hoover melting point apparatus or 
a Mettler FP66 automated melting point apparatus and are uncorrected. Fourier transform 
infrared sprectra were obtained using a Mattson 4020 Galaxy Series spectrophotometer. 
Proton ('H) nuclear magnetic resonance (NMR) spectra were measured with a General 
Electric GN-Omega 300 (300 MHz) spectrometer with either Me 4 Si (5 0.00) or residual 

15 protonated solvent (CHC1 3 5 7.26; MeOH 6 3.30; DMSO 6 2.49) as standard. Carbon 
( 13 C) NMR spectra were measured with a General Electric GN-Omega 300 (75 MHz) 
spectrometer with solvent (CDC1 3 8 77.0; MeOD-d 3 ; 8 49.0; DMSO-d 6 8 39.5) as 
standard. Low resolution mass spectra (MS) and high resolution mass spectra (HRMS) 
were either obtained as electron impact (EI) mass spectra or as fast atom bombardment 

20 (FAB) mass spectra. Electron impact mass spectra (EI-MS) were obtained, with a 
Hewlett Packard 5989A mass spectrometer equipped with a Vacumetrics Desorption 
Chemical Icnizaf.ion-Probe for sample introduction. The ion source was maintained at 
250 °C. Electron impact ionization was performed with electron energy of 70 eV and a 
trap current of 300 uA. Liquid-Cesium secondary ion mass spectra (FAB-MS), an 

25 updated version of fast atom bombardment were obtained using a Kratos Concept 1-H 
spectrometer. Chemical ionization mass spectra (CI-MS) were obtained using a Hewlett 
Packard MS -Engine (5 98 9 A) with methane or ammonia as the reagent gas (lxlO" 4 torr to 
2.5x1 0" 4 torr). The direct insertion desorption chemical ionization (DCI) probe 
(Vaccumetrics, Inc.) was ramped from 0-1.5 amps in 10 sec and held at 10 amps until all 

30 traces of the sample disappeared ( ~l-2 min). Spectra were scanned from 50-800 amu at 2 
sec per scan. HPLC - electrospray mass spectra (HPLC ES-MS) were obtained using a 



30 



WO 02/085859 



PCT/US02/12064 



Hewlett-Packard 1 100 HPLC equipped with a quaternary pump, a variable wavelength 
detector, a C-18 column, and a Finnigan LCQ ion trap mass spectrometer with 
electrospray ionization. Spectra were scanned from 120-800 amu using a variable ion 
time according to the number of ions in the source. Gas chromatography - ion selective 
5 mass spectra (GC-MS) were obtained with a Hewlett Packard 5890 gas chromatograph 
equipped with an HP-1 methyl silicone column (0.33 rnM coating; 25 m x 0.2 mm) and a 
Hewlett Packard 5971 Mass Selective Detector (ionization energy 70 eV). Elemental 
analyses were conducted by Robertson Microlit Labs, Madison NJ. 

10 All compounds displayed NMR spectra, LRMS and either elemental analysis or HRMS 
consistant with assigned structures. 

List of Abbreviations and Acronyms: 





AcOH 


acetic acid 


15 


anh 


anhydrous 




atm 


atmosphere(s) 




BOC 


/CTt-butoxycarbonyl 




GDI 


l,l'-carbonyl diimidazole 




cone 


concentrated 


20 


dec 


decomposition 




DMAC 


7V,7V-dimethylacetamide 




DMPU. . 


. L3-dimethyl-3,4,5,6-tetrahydro-2(lH)-pyrimidinone 




DMF 


. /V.Af-dimethylfoimamide . 




DMSO 


dimethylsulfoxide 


25 


DPPA 


diphenylphosphoryl azide 




EDCI 


l-(3-dimethylaminopropyl)-3-ethylcarbodiimide 




EtOAc 


ethyl acetate 




EtOH 


ethanol (100%) 




Et 2 0 


diethyl ether 


30 


Et 3 N 


triethylamine 




HOBT 


1 -hydroxybenzotriazole 



31 



WO 02/085859 



PCT/US02/12064 



m-CPBA 


3-chloroperoxybenzoic acid 


MeOH 


methanol 


pet. ether 


petroleum ether (boiling range 30-60 °C) 


THF 


tetrahydrofuran 


TFA 


trifluoroacetic acid 


Tf 


trifluoromethanesulfonyl 



A. General Methods for Synthesis of Substituted Anilines 

Al. General Method for Substituted Aniline Formation via Hydrogenation of a 
10 Nitroarene 




4-(4-Pyridinylmethyl)aniIine: To a solution of 4-(4-nitrobenzyl)pyridine (7.0 g, 32.68 
mmol) in EtOH (200 mL) was added 10% Pd/C (0.7 g) and the resulting slurry was 
shaken under a H2 atmosphere (50 psi) using a Parr shaker. After 1 h, TLC and 'H-NMR 
15 of an aliquot indicated complete reaction. The mixture was filtered through a short pad of 
Celite®. The filtrate was concentrated in vacuo to afford a white solid (5.4 g, 90%): 1 H- 
NMR (DMSO-d 6 ) 6 3.74 (s, 2H), 4.91 (br s, 2H), 6.48 (d, .7=8.46 Hz, 2H), 6.86 (d, J=8.09 
Hz, 2H), 7.16 (d, .7=5.88 Hz, 2H), 8.40 (d, J=5.88 Hz, 2H); EI-MS m/z 184 (M+). This 
material was used in urea formation reactions without further purification. 

20 

A2. General Method for Substituted Aniline Formation via Dissolving Metal 
Reduction of a Nitroarene 




4-(2-Pyridinylthio)aniline: To a solution of 4-(2-pyridinylthio)-l -nitrobenzene (Menai 
25 ST 3355A; 0.220 g, 0.95 mmol) and H2O (0.5 mL) in AcOH ( 5 mL) was added iron 
powder (0.317 g 3 5.68 mmol) and the resulting slurry stirred for 16 h at room temp. The 
reaction mixture was diluted with EtOAc (75 mL) and H2O (50 mL), basified to pH 10 by 

32 



WO 02/085859 



PCT/US02/12064 



adding solid K2CO3 in portions {Caution: foaming). The organic layer was washed with a 
saturated NaCl solution, dried (MgS04), concentrated in vacuo. The residual solid was 
purified by MPLC (30% EtOAc/70% hexane) to give the desired product as a thick oil 
(0.135 g, 70%): TLC (30% EtOAc/70% hexanes) R/0.20. 



A3 a. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 



Step 1. l-Methoxy-4-(4-nitrophenoxy)benzene: To a suspension of NaH.(95%, 1.50 g, 
10 59 mmol) in DMF (100 mL) at room temp, was added dropwise a solution of 4- 

methoxyphenol (7.39 g, 59 mmol) in DMF (50 mL). The reaction was stirred 1 h, then a 
solution of 1 -fluoro-4-nitrobenzene (7.0 g, 49 mmol) in DMF (50 mL) was added 
dropwise to form a dark green solution. The reaction was heated at 95 °C overnight, then 
cooled to room temp., quenched with H2O, and concentrated in vacuo. The residue was 
15 partitioned between EtOAc (200 mL) and H2O (200 mL). The organic layer was 

sequentially washed with H2O (2 x 200 mL), a saturated NaHCC>3 solution (200 mL), and 
a saturated NaCl solution (200 mL), dried (Na 2 S04), and concentrated in vacuo. The 
residue was triturated (Et 2 0/hexane) to afford l-methoxy-4-(4-nitrophenoxy)benzene 



(12.2 g, 100%): 'H-NMR (CDCI3) 6 3.83 (s, 3H), 6.93-7.04 (m, 6H), 8.18 (d, J-9.2 Hz, 
20 2H); EI-MS m/z 245 (M + ). 



Step 2. 4-(4-Methoxyphenoxy) aniline: To a solution of l-methoxy-4-(4- 
nitrophenoxy)benzene (12.0 g, 49 mmol) in EtOAc (250 mL) was added 5% Pt/C (1.5 g) 
25 and the resulting slurry was shaken under a H2 atmosphere (50 psi) for 1 8 h. The reaction 
mixture was filtered through a pad of Celite® with the aid of EtOAc and concentrated in 
vacuo to give an oil which slowly solidified (10.6 g, 100%): 'H-1S1MR (CDC1 3 ) 5 3.54 (br 
s, 2H), 3.78 (s, 3H), 6.65 (d, .7=8.8 Hz, 2H), 6.79-6.92 (m, 6H); EI-MS m/z 215 (M + ). 



5 





33 



WO 02/085859 



PCT/US02/12064 



A3b. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




5 Step 1. 3-(Trifluoromethyl)-4-(4-pyridinylthio)nitrobenzene: A solution of 4- 

mercaptopyridine (2.8 g, 24 mmoles), 2-fluoro-5-nitrobenzotrifluoride (5 g, 23.5 mmoles), 
and potassium carbonate (6.1 g, 44.3 mmoles) in anhydrous DMF (80 mL) was stirred at 
room temperature and under argon overnight. TLC showed complete reaction. The 
mixture was diluted with Et^O (100 mL) and water (100 mL) and the aqueous layer was 
10 back-extracted with Et-20 (2 x 100 mL). The organic layers were washed with a saturated 
NaCl solution (100 mL), dried (MgSC^X and concentrated under reduced pressure. The 
solid residue was triturated with E12O to afford the desired product as a tan solid (3.8 g, 
54%): TLC (30% EtOAc/70% hexane) R/0.06; 'H-NMR (DMSO-d 6 ) 6 7.33 (dd, ,7=1,2, 
4.2 Hz, 2H), 7.78 (d, 7=8.7 Hz, 1H), 8.46 (dd, 7=2.4, 8.7Hz, 1H), 8.54-8.56 (m, 3H). 



15 




Step 2. 3-(Trifluoromethyl)-4-(4-pyridinylthio)aniIine: A slurry of 3-trifluoromethyl- 
4-(4-pyridinylthio)nitrobenzene (3.8 g, 12.7 mmol), iron powder (4.0 g, 71.6 mmol), 
acetic acid (100 mL), and water (1 mL) were stirred at room temp, for 4 h. -The mixture 
was diluted with Et 2 0 (100 mL) and water (100 mL). The aqueous phase was adjusted to 

20 pH 4 with a 4 N NaOLT solution. The combined organic layers were washed with a 
saturated NaCl solution (100 mL), dried (MgS04), and concentrated under reduced 
pressure. The residue was filtered through a pad of silica (gradient from 50% EtOAc/50% 
hexane to 60% EtO Ac/40% hexane) to afford the desired product (3.3 g): TLC (50% 
EtOAc/50% hexane) R/0.10; l H-NMR (DMSO-d 6 ) 5 6.21 (s, 2H), 6.84-6.87 (m, 3H), 

25 7.10 (d, 7=2.4 Hz, 1H), 7.39 (d, 7=8.4 Hz, 1H), 8.29 (d, 7=6.3 Hz, 2H). 



34 



WO 02/085859 



PCT/US02/12064 



A3c. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




0,N 



Step 1. 4-(2 (4-Phenyl)thiazolyl)thio-l-nitrobenzene: A solution of 2-mercapto-4- 
5 phenylthiazole (4.0 g, 20.7 mmoles) in DMF (40 mL) was treated with l-fluoro-4- 
nitrobenzene (2.3 mL, 21.7 mmoles) followed by K 2 C0 3 (3.18 g, 23 mmol), and the 
mixture was heated at approximately 65 °C overnight. The reaction mixture was then 
diluted with EtOAc (100 mL), sequentially washed with water (100 mL) and a saturated 
NaCl solution (100 mL), dried (MgSCU) and concentrated under reduced pressure. The 
10 solid residue was triturated with a Et 2 0/hexane solution to afford the desired product (6.1 
g): TLC (25% EtOAc/75% hexane) R/0.49; 'H-NMR (CDC1 3 ) 5 7.35-7.47 (m, 3H), 7.58- 
7.63 (m, 3H), 7.90 (d, J=6.9 Hz, 2H), 8.19 (d, J=9.0 Hz, 2H). 



Step 2. 4-(2-(4-Phenyl)thiazolyl)thioaniline: 4-(2-(4-Phenyl)thiazolyl)thio-l-nitro- 
15 benzene was reduced in a manner analagous to that used in the preparation of 3- 

(trifluoromethyl)-4-(4-pyridinylthio)aniline: TLC (25% EtOAc/75% hexane) R/0.18; ! H- 
NMR (CDCI3) 6 3.89 (br s, 2H), 6.72-6.77 (m, 2H), 7.26-7!53(m^ 6H), 7.85-7.89 (m, 2H). 



A3d. General Method for Substituted Aniline Formation via Nitroarene Formation 
20 Through Nucleophilic Aromatic Substitution, Followed by Reduction 




Step 1. 4-(6-Methyl-3-pyridinyloxy)-l-nitrobenzene: To a solution of 5-hydroxy-2- 
methylpyridine (5.0 g, 45.8 mmol) and l-fluoro-4-nitrobenzene (6.5 g, 45.8 mmol) in anh 



35 



WO 02/085859 



PCT/US02/12064 



DMF (50 mL) was added K 2 C0 3 (13.0 g, 91.6 mmol) in one portion. The mixture was 
heated at the reflux temp, with stirring for 18 h and then allowed to cool to room temp. 
The resulting mixture was poured into water (200 mL) and extracted with EtOAc (3 x 150 
mL). The combined organics were sequentially washed with water (3 x 100 mL) and a 
5 saturated NaCl solution (2 x 100 mL), dried (Na 2 S0 4 ), and concentrated in vacuo to 

afford the desired product (8.7 g, 83%). This material was carried to the next step without 
further purification. 



10 pyridinyloxy)-l -nitrobenzene (4.0 g, 17.3 mmol) in EtOAc (150 mL) was added to 10% 
Pd/C (0.500 g, 0.47 mmol) and the resulting mixture was placed under a H 2 atmosphere 
(balloon) and was allowed to stir for 1 8 h at room temp. The mixture was then filtered 
through a pad of Celite® and concentrated in vacuo to afford the desired product as a tan 
solid (3.2 g, 92%): EI-MS m/z 200 (M+). 



A3e. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 



Step 1. 4-(3,4-Dimethoxyphenoxy)-l-nitrobenzene: To a solution of 3,4- 
20 dimethoxyphenol (1.0 g, 6.4 mmol) and l-fluoro-4-nitrobenzene (700 uL, 6.4 mmol) in 

anh DMF (20 mL) was added K 2 C0 3 (1.8 g, 12.9 mmol) in one portion. The mixture was 

heated at the reflux temp with stirring for 18 h and then allowed to cool to room temp. 

The mixture was then poured into water (100 mL) and extracted with EtOAc (3 x 100 

mL). The combined organics were sequentially washed with water (3x50 mL) and a 
25 saturated NaCl solution (2 x 50 mL), dried (Na 2 S0 4 ), and concentrated in vacuo to afford 

the desired product (0.8 g, 54%). The crude product was carried to the next step without 

fiirther purification. 




Step 2. 



4-(6-Methyl-3-pyridinyloxy)aniline: A solution of 4-(6-methyl-3- 



15 




36 



WO 02/085859 



PCT/US02/12064 





H 2 N OMe 
Step 2. 4-(3,4-Dimethoxyphenoxy)aniline: A solution of 4-(3,4-dimethoxy-phenoxy)-l- 
nitrobenzene (0.8 g, 3.2 mmol) in EtOAc (50 mL) was added to 10% Pd/C (0.100 g) and 
the resulting mixture was placed under a H 2 atmosphere (balloon) and was allowed to stir 
for 18 h at room temp. The mixture was then filtered through a pad of Celite® and 
concentrated in vacuo to afford the desired product as a white solid (0.6 g, 75%): EI-MS 
m/z 245 (M 4 ). 



A3f. General Method for Substituted Aniline Formation via Nitroarene Formation 
10 Through Nucleophilic Aromatic Substitution, Followed by Reduction 

Step 1. 3-(3-Pyridinyloxy)-l-nitrobenzene: To a solution of 3-hydroxypyridine (2.8 g, 
29.0 mmol), l-bromo-3 -nitrobenzene (5.9 g, 29.0 mmol) and copper(I) bromide (5.0 g, 
34.8 mmol) in aria DMF (50 mL) was added K 2 C0 3 (8.0 g, 58.1 mmol) in one portion. 

15 The resulting mixture was heated at the reflux temp, with stirring for 18 h and then 
allowed to cool to room temp. The mixture was then poured into water (200 mL) and 
extracted with EtOAc (3x150 mL). The combined organics were sequentially washed 
with water (3 x 100 mL) and a saturated NaCl solution (2 x 100 mL), dried (Na 2 S0 4 ), and 
concentrated in vacuo. The resulting oil was purified by flash chromatography (30% 

20 EtO Ac/70% hexane) to afford the desired product (2.0 g, 32 %). This material was used 
in the next step without further purification. 




Step 2. 3-(3-Pyridinyloxy)aniline: A solution of 3-(3-pyridinyloxy)-l-nitrobenzene 
(2.0 g, 9.2 mmol) in EtOAc (100 mL) was added to 10% Pd/C (0.200 g) and the resulting 
25 mixture was placed under a H 2 atmosphere (balloon) and was allowed to stir for 1 8 h at 
room temp. The mixture was then filtered through a pad of Celite® and concentrated in 
vacuo to afford the desired product as a red oil (1 .6 g, 94%): EI-MS m/z 1 86 (M + ). 

37 



WO 02/085859 PCT/US02/12064 



A3g. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




5 Step 1. 3-(5-Methyl-3-pyridinyloxy)-l -nitrobenzene: To a solution of 3-hydroxy-5- 
methylpyridine (5.0 g, 45.8 mmol), l-bromo-3 -nitrobenzene (12.0 g, 59.6 mmol) and 
copper(T) iodide (10.0 g, 73.3 mmol) in anh DMF (50 mL) was added K 2 C0 3 (13.0 g, 91.6 
mmol) in one portion. The mixture was heated at the reflux temp, with stirring for 18 h 
and then allowed to cool to room temp. The mixture was then poured into water (200 
10 mL) and extracted with EtOAc (3 x 150 mL). The combined organics were sequentially 
washed with water (3 x 100 mL) and a saturated NaCl solution (2 x 100 mL), dried 
(Na2SC>4), and- concentrated in vacuo . The resulting oil was purified by flash 
chromatography (30% EtO Ac/70% hexane) to afford the desired product (1.2 g, 13%). 




15 Step 2. 3-(5-Methyl-3-pyridmyloxy)-l-nitrobenzene: A solution of 3-(5-methyl-3- 
pyridinyloxy)-l -nitrobenzene (1.2 g, 5.2 mmol) in EtOAc (50 mL) was added to 10% 
Pd/C (0.100 g) and the resulting mixture was placed under a H2 atmosphere (balloon) and 
was allowed to stir for 1 8 h at room temp. The mixture was then filtered through a pad of 
Celite® and concentrated in vacuo to afford the desired product as a red oil (0.9 g, 86%): 

20 CI-MS m/z 201 ((M+H) + ). 

A3h. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




25 Step 1. 5-Nitro-2-(4-methylphenoxy)pyridine: To a solution of 2-chloro-5- 

nitropyridine (6.34 g, 40 mmol) in DMF (200 mL) were added of 4-methylphenol (5.4 g, 
50 mmol, 1.25 equiv) and K2CO3 (8.28 g, 60 mmol, 1.5 equiv). The mixture was stirred 

38 



WO 02/085859 PCT/US02/12064 



overnight at room temp. The resulting mixture was treated with water (600 mL) to 
generate a precipitate. This mixture was stirred for 1 h, and the solids were separated and 
sequentially washed with a 1 N NaOH solution (25 mL), water (25 mL) and pet ether (25 
mL) to give the desired product (7.05 g, 76%): mp 80-82 °C; TLC (30% EtOAc/70% pet 
5 ether) R/0.79; 'H-NMR (DMSO-d 6 ) 5 2.31 (s, 3H), 7.08 (d, .7=8.46 Hz, 2H), 7.19 (d, 
.7=9.20 Hz, 1H), 7.24 (d, .7=8.09 Hz, 2H), 8.58 (dd, 7=2.94, 8.82 Hz, 1H), 8.99 (d, .7=2.95 
Hz, 1H); FAB-MS m/z (rel abundance) 231 ((M+H) + ), 100%). 




Step 2. 5-Amino-2-(4-methylphenoxy)pyridine Dihydrochloride: A solution 5-nitro- 
10 2-(4-methylphenoxy)pyridine (6.94 g, 30 mmol, 1 eq) and EtOH (10 mL) in EtOAc (190 
mL) was purged with argon then treated with 10% Pd/C (0.60 g). The reaction mixture 
was then placed under a H 2 atmosphere and was vigorously stirred for 2.5 h. The reaction 
mixture was filtered through a pad of Celite®. A solution of HC1 in Et20 was added to the 
filtrate was added dropwise. The resulting precipitate was separated and washed with 
15 EtOAc to give the desired product (7.56 g, 92%): mp 208-210 °C (dec); TLC (50% 

EtOAc/50% pet ether) R/0.42; ! H-NMR (DMSO-d 6 ) 2.25 (s, 3H), 6.98 (d, .7=8.45 Hz, 
2H), 7.04 (d, .7=8.82 Hz, 1H), 7.19 (d, .7=8.09 Hz, 2H), 8.46 (dd, J=2.57, 8.46 Hz, 1H), 
8.63 (d, J=2.57 Hz, 1H); EI-MS m/z (rel abundance) (M + , 100%). 

20 A3i. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




Step 1. 4-(3-Thienylthio)-l-nitrobenzene: To a solution of 4-nitrothiophenol (80%pure; 
1.2 g, 6.1 mmol), 3-bromothiophene (1.0 g, 6.1 mmol) and copper(n) oxide (0.5 g, 3.7 
25 mmol) in anhydrous DMF (20 mL) was added KOH (0.3 g, 6.1 mmol), and the resulting 
mixture was heated at 130 °C with stirring for 42 h and then allowed to cool to room 

39 



WO 02/085859 



PCT/US02/12064 



temp. The reaction mixture was then poured into a mixture of ice and a 6N HC1 solution 
(200 mL) and the resulting aqueous mixture was extracted with EtOAc (3 x 1 00 mL). The 
combined organic layers were sequentially washed with a 1M NaOH solution (2 x 100 
mL) and a saturated NaCl solution (2 x 100 mL), dried (MgSC>4), and concentrated in 
vacuo . The residual oil was purified by MPLC (silica gel; gradient from 1 0% 
EtOAc/90% hexane to 5% EtOAc/95% hexane) to afford of the desired product (0.5 g, 
34%). GC-MS miz 237 (M 4 "). 




Step 2. 4-(3-Thienylthio)anilme: 4-(3-Thienylthio)-l -nitrobenzene was reduced to the 
aniline in a manner analogous to that described in Method Al . 



A3j. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 




4-(5-Pyrimininyloxy)aniline: 4-Aminophenol (1 .0 g, 9.2 mmol) was dissolved in DMF 
(20 mL) then 5-bromopyrimidine (1.46 g, 9.2 mmol) and K2CO3 (1.9 g, 13.7 mmol) were 
added. The mixture was heated to 100 °C for 18 h and at 130 °C for 48 h at which GC- 
MS analysis indicated some remaining starting material. The reaction mixture was cooled 
to room temp, and diluted with water (50 mL). The restilting solution was extracted with 
EtOAc (1 00 mL). The organic layer was washed with a saturated NaCl solution (2x50 
mL), dried (MgS04), and concentrated in vacuo. The residual solids were purified by 
MPLC (50% EtOAc/50% hexanes) to give the desired amine (0.650 g, 38%). 

A3 k. General Method for Substituted Aniline Formation via Nitroarene Formation 
Through Nucleophilic Aromatic Substitution, Followed by Reduction 

Br — <f 7— OMe 



40 



WO 02/085859 



PCT/US02/12064 



Step 1. 5-Bromo-2-rnethoxypyridine: A mixture of 2,5-dibromopyridine (5.5 g, 23.2 
mmol) and NaOMe (3.76g, 69.6 mmol) in MeOH (60 mL) was heated at 70 °C in a sealed 
reaction vessel for 42 h, then allowed to cool to room temp. The reaction mixture was 
treated with water (50 mL) and extracted with EtOAc (2 x 100 mL). The combined 
5 organic layers were dried (Na2SC>4) and concentrated under reduced pressure to give a 
pale yellow, volatile oil (4.1g, 95% yield): TLC (10% EtOAc / 90% hexane) R/0.57. 

HO-/ y—OUe 

Step 2. 5-Hydroxy-2-methoxypyridine: To a stirred solution of 5-bromo-2- 
methoxypyridine (8.9 g, 47.9 mmol) in THF (175 mL) at -78 °C was added an n- 

10 butyllithium solution (2.5 M in hexane; 28.7 mL, 71 .8 mmol) drop wise and the resulting 
mixture was allowed to stir at -78 °C for 45 min. Trimethyl borate (7.06 mL, 62.2 mmol) 
was added via syringe and the resulting mixture was stirred for an additional 2 h. The 
bright orange reaction mixture was warmed to 0 °C and was treated with a mixture of a 3 
N NaOH solution (25 mL, 71 .77 mmol) and a hydrogen peroxide solution (30%; approx. 

15 50 mL). The resulting yellow and slightly turbid reaction mixture was warmed to room 
temp, for 30 min and then heated to the reflux temp, for 1 h. The reaction mixture was 
then allowed to cool to room temp. The aqueous layer was neutralized with a IN HC1 
solution then extracted with Et20 (2 x 100 mL). The combined organic layers were dried 
(Na2SC>4) and concentrated under reduced pressure to give a viscous yellow oil (3.5g, 

20 60%). 




OMe 



Step 3. 4-(5-(2-Methoxy)pyridyl)oxy-l-nitrobenzene: To a stirred slurry of NaH 
(97%, 1.0 g, 42 mmol) in anh DMF (100 mL) was added a solution of 5-hydroxy-2- 
methoxypyridme (3.5g, 28 mmol) in DMF (100 mL). The resulting mixture was allowed 
25 to stir at room temp, for 1 h, 4-fluoronitrobenzene (3 mL, 28 mmol) was added via 

syringe. The reaction mixture was heated to 95 °C overnight, then treated with water (25 
mL) and extracted with EtOAc (2 x 75 mL). The organic layer was dried (MgSCU) and 
concentrated under reduced pressure. The residual brown oil was crystalized 
EtOAc/hexane) to afford yellow crystals (5.23 g, 75%). 



41 



WO 02/085859 



PCT/US02/12064 





H 2 N ^ N OMe 

Step 4. 4-(5-(2-Methoxy)pyridyl)oxyaniline: 4-(5-(2-Mefhoxy)pyridyl)oxy-l- 
nitrobenzene was reduced to the aniline in a manner analogous to that described in 
Method A3d, Step2. 

A4a. General Method for Substituted Aniline Synthesis via Nucleophilic Aromatic 
Substitution using a Halopyridine 





H 2 N v S 

3- (4-Pyridinylthio)aniline: To a solution of 3-aminothiophenol (3.8 mL, 34 mmoles) in 
10 anh DMF (90mL) was added 4-chloropyridine hydrochloride (5.4 g, 35.6 mmoles) 

followed by K2CO3 (16.7 g, 121 mmoles). The reaction mixture was stirred at room temp, 
for 1.5 h, then diluted with EtOAc (100 mL) and water (lOOmL). The aqueous layer was 
back-extracted with EtOAc (2 x 100 mL). The combined organic layers were washed 
with a saturated NaCl solution (100 mL), dried (MgSC>4), and concentrated under reduced 
15 pressure. The residue was filtered through a pad of silica (gradient from 50% EtOAc/50% 
hexane to 70% EtOAc/30% hexane) and the resulting material was triturated with a 
Et 2 0/hexane solution to afford the desired product (4.6 g, 66%): TLC (100 % ethyl 
acetate) R/0.29; 'H-NMR (DMSO-d 6 ) 6 5.41 (s, 2H), 6.64-6.74 (m, 3H), 7.01 (d, J=4.8, 
2H), 7.14 (t, J=7.8 Hz, 1H), 8.32 (d, J=4.8, 2H). 

20 

A4b. General Method for Substituted Aniline Synthesis via Nucleophilic Aromatic 
Substitution using a Halopyridine 

4- (2-MethyI-4-pyridinyloxy)aniline: To a solution of 4-aminophenol (3.6 g, 32.8 mmol) 
25 and 4-chloropicoline (5.0 g, 39.3 mmol) in anh DMPU (50 mL) was added potassium tert- 

butoxide (7.4 g, 65.6 mmol) in one portion. The reaction mixture was heated at 100 °C 
with stirring for 18 h, then was allowed to cool to room temp. The resulting mixture was 



42 



WO 02/085859 



PCT/US02/12064 



poured into water (200 mL) and extracted with EtOAc (3 x 150 mL). The combined 
extracts were sequentially washed with water (3 x 100 mL) and a saturated NaCl solution 
(2 x 100 mL), dried (NasSCU), and concentrated in vacuo. The resulting oil was purified 
by flash chromatography (50 % EtOAc/50% hexane) to afford the desired product as a 
5 yellow oil (0.7 g, 9%): CI-MS m/z 201 ((M+H) 4 ). 

A4c. General Method for Substituted Aniline Synthesis via Nucleophilic Aromatic 
Substitution using a Halopyridine 



Step 1. Methyl(4-nitrophenyl)-4-pyridylamine: To a suspension of iV-methyl-4- 
nitroaniline (2.0 g, 13.2 mmol) and K 2 C0 3 (7.2 g, 52.2 mmol) in DMPU (30mL) was 
added 4-chloropyridine hydrochloride (2.36 g, 15.77 mmol). The reaction mixture was 
heated at 90 °C for 20 h, then cooled to room temperature. The resulting mixture was 
15 diluted with water (100 mL) and extracted with EtOAc (100 mL). The organic layer was 
washed with water (100 mL), dried (NaaSO^O and concentrated under reduced pressure. 
The residue was purified by column chromatography (silica gel, gradient from 80% 
EtOAc /20% hexanes to 100% EtOAc) to afford methyl(4-nitrophenyl)-4-pyridylamine 
(0.42 g) 



Step 2. Methyl(4-aminophenyl)-4-pyridylamine: Methyl(4-nitrophenyl)-4- 
pyridylamine was reduced in a manner analogous to that described in Method Al. 

A5. General Method of Substituted Aniline Synthesis via Phenol Alkylation 
25 Followed by Reduction of a Nitroarene 




Me 



20 




43 



WO 02/085859 



PCT/US02/12064 




Step 1. 4-(4-Butoxyphenyl)thio-l-nitrobenzene: To a solution of 4-(4-nitrophenyl- 
thio)phenol (1.50 g, 6.07 mmol) in anh DMF (75 ml) at 0 °C was added NaH (60% in 
mineral oil, 0.267 g, 6.67 mmol). The brown suspension was stirred at 0 °C until gas 
5 evolution stopped (1 5 min), then a solution of iodobutane (1 . 12 g, .690 ml, 6.07 mmol) in 
anh DMF (20 mL) was added dropwise over 15 min at 0 °C. The reaction was stirred at 
room temp, for 18 h at which time TLC indicated the presence of unreacted phenol, and 
additional iodobutane (56 mg, 0.035 mL, 0.303 mmol, 0.05 equiv) and NaH (13 mg, 
0.334 mmol) were added. The reaction was stirred an additional 6 h at room temp., then 

10 was quenched by the addition of water (400 mL). The resulting mixture was extracted 
with Et 2 0 (2 x 500 mL). The combined organics were washed with water (2 x 400 mL), 
dried (MgS04), and concentrated under reduced pressure to give a clear yellow oil, which 
was purified by silica gel chromatography (gradient from 20% EtOAc/80% hexane to 
50% EtOAc/50% hexane) to give the product as a yellow solid (1.24 g, 67%): TLC (20% 

15 EtO Ac/80% hexane) R/0.75; ! H-NMR (DMSO-d 6 ) 6 0.92 (t, J= 7.5 Hz, 3H), 1.42 (app 
hex, y=7.5 Hz, 2H), 1.70 (m, 2H), 4.01 (t, J= 6.6 Hz, 2H), 7.08 (d, .7=8.7 Hz, 2H), 7.17 
(d, J=9 Hz, 2H), 7.51 (d, J= 8.7 Hz, 2H), 8.09 (d, J= 9 Hz, 2H). 




Step 2. 4-(4-Butoxyphenyl)thioaniline: 4-(4-Butoxyphenyl)thio-l -nitrobenzene was 
20 reduced to the aniline in a manner analagous to that used in the preparation of 3- 
(trifluoromethyl)-4-(4-pyridinylthio)aniline (Method A3b, Step 2): TLC (33% 
EtO Ac/77% hexane) 0.38. 

A6. General Method for Synthesis of Substituted Anilines by the Acylation of 
25 Diaminoarenes 




44 



WO 02/085859 



PCT/US02/12064 



4-(4-tert-Butoxycarbamoylbenzyl)aniline: To a solution of 4,4'-methylenedianiline 
(3.00 g, 15.1 mmol) in anh THF (50 mL) at room temp was added a solution of di-tert- 
butyl dicarbonate (3.30 g, 15.1 mmol) in anh THF (10 mL). The reaction mixture was 
heated at the reflux temp, for 3 h, at which time TLC indicated the presence of unreacted 
5 methylenedianiline. Additional di-ferf -butyl dicarbonate (0.664 g, 3.03 mmol, 0.02 equiv) 
was added and the reaction stirred at the reflux temp, for 16 h. The resulting mixture was 
diluted with Et 2 0 (200 mL), sequentially washed with a saturated NaHCOa solution (100 
ml), water (100 mL) and a saturated NaCl solution (50 mL), dried (MgS04), and 

concentrated under reduced pressure. The resulting white solid was purified by silica gel 
10 chromatography (gradient from 33% EtOAc/67% hexane to 50% EtOAc/50% hexane) to 
afford the desired. product as a white solid ( 2.09 g, 46%): TLC (50% EtO Ac/50% 
hexane) R/0.45; 'H-NMR (DMSO-d 6 ) 5 1.43 (s, 9H), 3.63 (s, 2H), 4.85 (br s, 2H), 6.44 
(d, 7=8.4 Hz, 2H), 6.80 (d, J=8.1 Hz, 2H), 7.00 (d, .7=8.4 Hz, 2H), 7.28 (d, 7=8.1 Hz, 
2H), 9.18 (br s, 1H); FAB-MS m/z 298 (M + ). . 

15 

A7. General Method for the Synthesis of Aryl Amines via Electrophilic Nitration 
Followed by Reduction 




Step 1. 3-(4-NitrobenzyI)pyridine: A solution of 3-benzylpyridine (4.0 g, 23.6 

20 mmol) and 70% nitric acid (30 mL) was heated overnight at 50 °C. The resulting mixture 
was allowed to cool to room temp, then poured into ice water (350 mL). The aqueous 
mixture then made basic with a IN NaOH solution, then extracted with Et 2 0 (4 x 100 
mL). The combined extracts were sequentially washed with water (3 x 100 mL) and a 
saturated NaCl solution (2 x 100 mL), dried (Na 2 S04), and concentrated in vacuo. The 
25 residual oil was purified by MPLC (silica gel; 50 % EtOAc/50% hexane) then 

recrystallization (EtOAc/hexane) to afford the desired product (1.0 g, 22%): GC-MS m/z 
214 (M + ). 



45 



WO 02/085859 PCT/US02/12064 




Step 2. 3-(4-PyridinyI)metliylaniline: 3-(4-Nitrobenzyl)pyridine was reduced to the 
aniline in a manner analogous to that described in Method Al . 



5 A8. General Method for Synthesis of Aryl Amines via Substitution with 
Nitrobenzyl Halides Followed by Reduction 




Step 1. 4-(l-Imidazolylmethyl)-l-nitrobenzene: To a solution of imidazole (0.5 g, 7.3 
mmol) and 4-nitrobenzyl bromide (1 .6 g, 7.3 mmol) in anh acetonitrile (30 mL) was 

10 added K2CO3 (1.0 g, 7.3 mmol). The resulting mixture was stirred at room temp, for 18 h 
and then poured into water (200 mL) and the resulting aqueous solution was extracted 
with EtOAc (3x 50 mL). The combined organic layers were sequentially washed with 
water (3 x 50 mL) and a saturated NaCl solution (2 x 50 mL), dried (MgS04), and 
concentrated in vacuo. The residual oil was purified by MPLC (silica gel; 25% 

15 EtOAc/75% hexane) to afford the desired product (1.0 g, 91%): EI-MS m/z 203 (M + ). 




Step 2. 4-(l-Imidazolylmethyl)aniline: 4-(l-Imidazolylmethyl)-l -nitrobenzene was 
reduced to the aniline in a manner analogous to that described in Method A2. 

20 A9. Formation of Substituted Hydroxymethylanilines by Oxidation of Nitrobenzyl 
Compounds Followed by Reduction 

OH 




Step 1. 4-(l-Hydroxy-l-(4-pyridyl)methyl-l -nitrobenzene: To a stirred solution of 3- 
(4-nitrobenzyl)pyridine (6.0 g, 28 mmol) in CH 2 C1 2 (90 mL) was added ?n-CPBA (5.80 g, 

46 



WO 02/085859 



PCT/US02/12064 



33.6 mmol) at 10 °C, and the mixture was stirred at room temp, overnight. The reaction 
mixture was successively washed with a 10% NaHSC>3 solution (50 mL), a saturated 
K 2 C0 3 solution (50 mL) and a saturated NaCl solution (50 mL), dried (MgS0 4 ) and 
concentrated under reduced pressure. The resulting yellow solid (2.68 g) was dissolved in 
5 anh acetic anhydride (30 mL) and heated at the reflux temperature overnight. The mixture 
was concentrated under reduced pressure. The residue was dissolved in MeOH (25 mL) 
and treated with a 20% aqueous NH3 solution (30 mL). The mixture was stirred at room 
temp, for 1 h, then was concentrated under reduced pressure. The residue was poured into 
a mixture of water (50 mL) and CH 2 C1 2 (50 mL). The organic layer was dried (MgSCU), 
10 concentrated tinder reduced pressure, and purified by column chromatography (80% 

EtOAc/ 20% hexane) to afford the desired product as a white solid. (0.53 g, 8%): mp 110- 
118 °C; TLC (80% EtOAc/20% hexane) R/0.12; FAB-MS m/z 367 ((M+H) + , 100%). 



OH 




15 Step 2. 4-(l-Hydroxy-l-(4-pyridyl)methyIamIme: 4-( 1 -Hydroxy- l-(4-pyridyl)-methyl- 
1 -nitrobenzene was reduced to the aniline in a manner analogous to that described in 
Method A3d, Step2. 

A10. Formation of 2-(iV-methylcarbamoyl)pyridines via the Menisci reaction 



O 



20 




Step 1. 2-(/V-methylcarbamoyl)-4-chloropyridine. (Caution: this is a highly hazardous, 
potentially explosive reaction.) To a solution of 4-chloropyridine (10.0 g) in N- 
methylformamide (250 mL) under argon at ambient temp was added cone. H2SO4 (3.55 
mL) (exotherm). To this was added H 2 0 2 (17 mL, 30% wt in H 2 0) followed by 
25 FeS04'7H 2 0 (0.55 g) to produce an exotherm. The reaction was stirred in the dark at 
ambient temp for lh then was heated slowly over 4 h at 45 °C. When bubbling 
subsided,the reaction was heated at 60 °C for 16 h. The resulting opaque brown solution 



47 



WO 02/085859 



PCT/US02/12064 



• was diluted with H 2 0 (700 mL) followed by a 10% NaOH solution (250 mL). The 
resulting aqueous mixture was extracted with EtOAc (3 x 500 mL) and the organic layers 
were washed separately with a saturated NaCl solution (3x150 mL). The combined 
organics phases were dried (MgSO^ and filtered through a pad of silica gel eluting with 
5 EtOAc. The solvent was removed in vacuo and the brown residue was purified by silica 
gel chromatography (gradient from 50% EtOAc / 50% hexane to 80% EtOAc / 20% 
hexane). The resulting yellow oil crystallized at 0 °C over 72 h to give 2-(7V- 
methylcarbamoyl)-4-chloropyridine in yield (0.61 g, 5.3%): TLC (50% EtOAc/50% 
hexane) R/0.50; MS; l HNMR (CDC1 3 ): d 8.44 (d, 1 H, J = 5.1 Hz, CHN), 8.21 (s, 1H, 
10 CHCCO), 7.96 (b s, 1H, NH), 7.43 (dd, 1H, J = 2.4, 5.4 Hz, C1CHCN), 3.04 (d, 3H, J = 
5.1 Hz, methyl); CI-MS m/z 171 ((M+H)+). 

Step lb. Synthesis of 4-chloropyridine-2-carbonyl chloride HCI salt via 



1 5 Anhydrous DME (6.0 mL) was slowly added to SQC1 2 (180 mL) between 40° and 50 °C. 
The solution was stirred in that temperature range for 10 min. then picolinic acid (60.0 g, 
487 mmol) was added in portions over 30 min. The resulting solution was heated at 72 °C 
(vigorous SO2 evolution) for 16 h to generate a yellow solid precipitate. The resulting 
mixture was cooled to room temp., diluted with toluene (500 mL) and concentrated to 

20 200 mL. The toluene addition/concentration process was repeated twice. The resulting 
nearly dry residue was filtered and the solids were washed with toluene (2 x 200 mL) and 
dried under high vacuum for 4 h to afford 4-chloropyridine-2-carbonyl chloride HCI salt 
as a yellow-orange solid (92.0 g, 89%). 



Anh DMF (10.0 mL) was slowly added to SOCl 2 (300 mL) at 40-48 °C. The solution 
was stirred at that temp, range for 10 min., then picolinic acid (100 g, 812 mmol) was 
added over 30 min. The resulting solution was heated at 72 °C (vigorous SO2 evolution) 
for 16 h to generate a yellow solid. The resulting mixture was 'cooled to room temp., 



picolinic acid 



O 




25 Step 2. 



Synthesis of methyl 4-chIoropyridme-2-carboxyIate HCI salt 



48 



WO 02/085859 



PCT/US02/12064 



diluted with toluene (500 mL) and concentrated to 200 mL. The toluene 
addition/concentration process was repeated twice. The resulting nearly dry residue was 
filtered, and the solids were washed with toluene (50 mL) and dried under high vacuum 
for 4 hours to afford 4-chloropyridine-2-carbonyl chloride HC1 salt as an off-white solid 
5 (27.2 g, 16%). This material was set aside. 

The red filtrate was added to MeOH (200 mL) at a rate which kept the internal 
temperature below 55 °C. The contents were stirred at room temp, for 45 min., cooled to 
5 °C and treated with Et 2 0 (200 mL) dropwise. The resulting solids were filtered, 



10 washed with Et20 (200 mL) and dried under reduced pressure at 35 °C to provide methyl 
4-chloropyridine-2-carboxylate HC1 salt as a white solid (1 10 g, 65%): mp 108-112 °C; 
'H-NMR (DMSO-d 6 ) 5 3.88 (s, 3H); 7.82 (dd, .7=5.5, 2.2 Hz, 1H); 8.08 (d, .7=2.2 Hz, 
1H); 8.68 (d, .7=5.5 Hz, 1H); 10.68 (br s, 1H); HPLC ES-MS m/z 172 ((M+H) + ). 



A suspension of methyl 4-chloropyridine-2-carboxylate HC1 salt (89.0 g, 428 mmol) in 
MeOH (75 mL) at 0 °C was treated with a 2.0 M methylamine solution in THF .(1 L) at a 
rate which kept the internal temp, below 5 °C. The resulting mixture was stored at 3 °C 
20 for 5 h, then concentrated under reduced pressure. The resulting solids were suspended 
in EtOAc (1 L) and filtered. The filtrate was washed with a saturated NaCl solution (500 
mL), dried (Na2S04) and concentrated under reduced pressure to afford 4-chloro-iV- 



methyl-2-pyridinecarboxamide as pale-yellow crystals (71.2 g, 97%): mp 41-43 °C; X H- 
NMR (DMSO-de) 8 2.81 (s, 3H), 7.74 (dd, .7=5.1, 2.2 Hz, 1H), 8.00 (d, J=2.2, 1H), 8.61 
25 (d, 7=5.1 Hz, 1H), 8.85 (br d, 1H); CI-MS m/z 171 ((M+H) + ). 



O 




15 Step 3a. 



Synthesis of 4-chloro-A r -methyI-2-pyridinecarboxamide from methyl 
4-chloropyridine-2-carboxylate 



O 




49 



WO 02/085859 



PCT/US02/12064 



25 



Step 3b. Synthesis of 4-chloro-A r -methyl-2-pyridinecarboxamide from 4- 
chloropyridine-2-carbonyl chloride 

4-Chloropyridine-2-carbonyl chloride HC1 salt (7.0 g, 32.95 mmol) was added in portions 
to a mixture of a 2.0 M methylamine solution in THF (100 mL) and MeOH (20 mL) at 0 
°C. The resulting mixture was stored at 3 °C for 4 h, then concentrated under reduced 
pressure. The resulting nearly dry solids were suspended in EtOAc (100 mL) and 
filtered. The filtrate was washed with a saturated NaCl solution (2 x 100 mL), dried 
(Na 2 SC>4) and concentrated under reduced pressure to provide 4-chloro-A r -methyl-2- 
pyridmecarboxamide' as a yellow, crystalline solid (4.95 g, 88%): mp 37-40 °C. 

O 



10 H * N 




NHMe 



Step 4. Synthesis of 4-(2-(iV-niethylcarbamoyl)-4-pyridyIoxy)aniline 

A solution of 4-aminophenol (9.60 g, 88.0 mmol) in anh. DMF (150 mL) was treated 
with potassium fert-butoxide (10.29 g, 91 .7 mmol), and the reddish-brown mixture was 
stirred at room temp, for 2 h. The contents were treated with 4-chloro-iV-methyl-2- 

15 pyridinecarboxamide (15.0 g, 87.9 mmol) and K2CO3 (6.50 g, 47.0 mmol) and then 

heated at 80 °C for 8 h. The mixture was cooled to room temp, and separated between 
EtOAc (500 mL) and a saturated NaCl solution (500 mL). The aqueous phase was back- 
extracted with EtOAc (300 mL). The combined organic layers were washed with a 
saturated NaCl solution (4 x 1000 mL), dried (Na2S04) and concentrated under reduced 

20 pressure. The resulting solids were dried under reduced pressure at 35 °C for 3 h to 
afford 4-(2-(A^-methylcarbamoyl)-4-pyridyloxy)aniline as a light-brown solid 17.9 g, 
84%): 'H-NMR (DMSO-d 6 ) 5 2.77 (d, .7=4.8 Hz, 3H), 5.17 (br s, 2H), 6.64, 6.86 
(AA'BB' quartet, .7=8.4 Hz, 4H), 7.06 (dd, J=5.5, 2.5 Hz, 1H), 7.33 (d, J=2.5 Hz, 1H), 
8.44 (d, J=5.5 Hz, 1H), 8.73 (br d, 1H); HPLC ES-MS m/z 244 ((M+H) + ). 



All. General Method for the Synthesis of 5-(4-Ammophenoxy)isoindoline- 

1,3-dione 



50 



WO 02/085859 



PCT/US02/12064 



O 




O 



Step 1. Synthesis of 5-hydroxyisoindoIine-l,3-dione 

To a mixture of ammonium carbonate (5.28 g, 54.9 mmol) in cone. AcOH (25 mL) was 
slowly added 4-hydroxyphthalic acid (5.0 g, 27.45 mmol). The resulting mixture was 
5 heated at 120 °C for 45 min., then 'the clear, bright yellow mixture was heated at 1 60 °C 
for 2 h. The resulting mixture was maintained at 160 °C and was concentrated to 
approximately 15 mL, then was cooled to room temp, and adjusted pH 10 with a IN 
NaOH solution. This mixture was cooled to 0 °C and slowly acidified to pH 5 using a IN 
HC1 solution. The resultant precipitate was collected by filtration and dried under 
10 reduced pressure to yield 5-hydroxyisoindoline-l,3-dione as a pale yellow powder as 

product (3.24 g, 72%): *H NMR (DMSO-d 6 ) 5 7.00-7.03 (m, 2H), 7.56 (d, J=9.3Hz, 1H). 




Step 2. Synthesis of 5-(4~nitrophenoxy)isoindoline-l,3-dione 

15 To a stirring slurry of NaH (1 .1 g, 44.9 mmol) in DMF (40 mL) at 0 °C was added a 
solution of 5-hydroxyisoindoline-l,3-dione (3.2 g, 19.6 mmol) in DMF (40 mL) 
dropwise. The bright yellow-green mixture was allowed to return to room temp, and was 
stirred for 1 h, then l-fluoro-4-nitrobenzene (2.67 g, 18.7 mmol) was added via syringe in 
3-4 portions. The resulting mixture was heated at 70 °C overnight, then cooled to room 

20 temp, and diluted slowly with water (150 mL), and extracted with EtOAc (2 x 1 00 mL). 
. The combined organic layers were dried (MgS04) and concentrated under reduced 
pressure to give 5-(4-nitrophenoxy)isoindoline-l,3-dione as a yellow solid (3.3 g, 62%): 
TLC (30% EtO Ac/70% hexane) R r 0.28; 1H NMR (DMSO-d 6 ) 5 7.32 (d, J=12 Hz, 2H), 
7.52-7.57 (m, 2H), 7.89(d, .7=7.8 Hz, 1H), 8.29 (d, J=9 Hz, 2H), 1 1.43 (br s, 1H); CI-MS 

25 m/z 285 ((M+H) + , 100%). 



51 



WO 02/085859 



PCT/US02/12064 




Step 3. Synthesis of 5-(4-aminophenoxy)isoindoline-l,3-dione 

A solution of 5-(4-nitrophenoxy)isoindoline-l,3-dione (0.6 g, 2.11 mmol) in cone. AcOH 
(12 mL) and water (0.1 ml) was stirred under stream of argon while iron powder (0.59 g, 
5 55.9 mmol) was added slowly. This mixture stirred at room temp, for 72 h, then was 
diluted with water (25 mL) and extracted with EtOAc (3 x 50 mL). The combined 
organic layers were dried (MgS04) and concentrated under reduced pressure to give 5-(4- 
aminophenoxy)isoindoline-l,3-dione as a brownish solid (0.4 g, 75%): TLC (50% 
EtOAc/50% hexane) R/0.27; 'HNMR (DMSO-d 6 ) 5 5.14 (br s, 2H), 6.62 (d, .7=8.7 Hz, 
10 2H), 6.84 (d, J=8.7 Hz, 2H), 7.03 (d, .7=2.1 Hz, 1H), 7.23 (dd, 1H), 7.75 (d, J=8A Hz, 
1H), 1 1.02 (s, 1H); HPLC ES-MS m/z 255 ((M+H) + , 100%). 

A12. General Method for the Synthesis of S-Sulfonylphenyl Anilines 




15 Step 1. 4-(4-MethylsuIfonylphenoxy)-l-nitrobenzene: To a solution of 4-(4- 

methylthiophenoxy)-l-ntirobenzene (2 g, 7.66 mmol) in CH 2 C1 2 (75 mL) at 0 °C was 
slowly added otCPBA (57-86%, 4 g), and the reaction mixture was stirred at room 
temperature for 5 h. The reaction mixture was treated with a 1 N NaOH solution (25 mL). 
The organic' layer was sequentially washed with a IN NaOH solution (25 mL), water (25 

20 mL) and a saturated NaCl solution (25 mL), dried (MgS04), and concentrated under 

reduced pressure to give 4-(4-methylsulfonylphenoxy)-l -nitrobenzene as a solid (2.1 g). 

Step 2. 4-(4-Methylsulfonylphenoxy)-l-aniline: 4-(4-Methylsulfonylphenoxy)-l- 
nitrobenzene was reduced to the aniline in a manner anaologous to that described in 
25 Method A3d, step 2. 

A13. General Method for Synthesis of 5-Alkoxy-6-carboxyphenyl Anilines 



52 



WO 02/085859 



PCT/US02/12064 



Step 1. 4-(3-Methoxycarbonyl-4-methoxyphenoxy)-l-nitrobenzene: To a solution of 
-(3-carboxy-4-hydroxyphenoxy)-l -nitrobenzene (prepared in a manner analogous to that 
described in Method A3a, step 1, 12 rnmol) in acetone (50 mL) was added K 2 C0 3 (5 g) 
5 and dimethyl sulfate (3.5 mL). The resulting mixture was heated at the reflux temperature 
overnight, then cooled to room temperature and filtered through a pad of Celite®. The 
resulting solution was concentrated under reduced pressure, absorbed onto silica gel, and 
purified by column chromatography (50% EtOAc / 50% hexane) to give 4-(3- 
methoxycarbonyl-4-methoxyphenoxy)-l-nitrobenzene as a yellow powder (3 g): mp 115- 
10 118 °C. 



O 




Step 2. 4-(3-Carboxy-4-methoxyphenoxy)-l-nitrobenzene: A mixture of 4-(3- 
methoxycarbonyl-4-methoxyphenoxy)-l -nitrobenzene (1.2 g), KOH (0.33 g),and water (5 
mL) in MeOH (45 mL) was stirred at room temperature overnight and then heated at the 
15 reflux temperature for 4 h. The resulting mixture was cooled to room temperature and 
concentrated under reduced pressure. The residue was dissolved in water (50 mL), and 
the aqueous mixture was made acidic with a IN HC1 solution. The resulting mixture was 
extracted with EtOAc (50 mL). The .organic Jayet. was dried (MgS0 4 ) and concentrated 
under reduced pressure to give 4-(3-carboxy-4-methoxyphenoxy)-l -nitrobenzene (1.04 g). 

20 



25 



0 7 N 




Step 3. 4-(3-(A , '-Methylcarbamoly)-4-methoxyphenoxy)-l-nitrdbenzene: 

To a solution of 4-(3-carboxy-4-methoxyphenoxy)-l-nitrobenzene (0.50 g, 1.75 mmol) in 
CH 2 C1 2 (12 mL) was added SOCl 2 (0.64 mL, 8.77 mmol) in portions. The resulting 



53 



WO 02/085859 



PCT/US02/12064 



solution was heated at the reflux temp, for 18 h, cooled to room temp., and concentrated 
under reduced pressure. The resulting yellow solids were dissolved in CH2CI2 (3 mL) 
then the resulting solution was treated with a methylamine solution (2.0 M in THF, 3.5 
mL, 7.02 mrnoT) in portions (CAUTION: gas evolution), and stirred at room temp, for 4 
5 h. The resulting mixture was treated with a IN NaOH solution, then extracted with 

CH2CI2 (25 mL). The organic layer was dried (Na 2 S04) and concentrated under reduced 
pressure to give 4-(3-(A r -methylcarbamoly)-4-methoxyphenoxy)-l -nitrobenzene as a 
yellow solid (0.50 g, 95%). 



O 




10 Step 4. 4-(3-(iV-Methylcarbamoly)-4-methoxyphenoxy)aniline: 

A slurry of 4-(3-(A/-methylcarbamoly)-4-methoxyphenoxy)-l -nitrobenzene (0.78 g, 2.60 
mmol) and 10% Pd/C (0.20 g) in EtOH (55 mL) was stirred under 1 arm of H 2 (balloon) 
for 2.5 d, then was filtered through a pad of Celite®. The resulting solution was 
concentrated under reduced pressure to afford 4-(3-(A r -methylcarbamoly)-4- 
15 methoxyphenoxy)aniline as an off-white solid (0.68 g, 96%): TLC (0.1% Et 3 N/99.9% 
EtOAc)R / 0.36. 



A14. General Method for the Synthesis of 4-(3-iV- 

20 Methylcarbamoylphenofy)anjlinec . 

O - 




Step 1. Synthesis of 4-(3-ethoxycarbonylphenoxy)-l -nitrobenzene 

A mixture of 4-fluoro-l -nitrobenzene (16 mL, 150 mmol), ethyl 3 -hydroxybenz o ate 25 g, 
150 mmol) and K2CO3 (41 g, 300 mmol) in DMF (125 mL) was heated at the reflux 
25 temp, overnight, cooled to room temp, and treated with water (250 mL). The resulting 
mixture was extracted with EtOAc (3 x 150 mL). The combined organic phases were 
sequentially washed with water (3 x 100 mL) and a saturated NaCl solution (2 x 100 



54 



WO 02/085859 



PCT/US02/12064 



mL), dried (Na 2 SC>4) and concentrated under reduced pressure. The residue was purified 
by column chromatography (10% EtOAc/90% hexane) to afford 4-(3- 
ethoxycarbonylphenoxy)-! -nitrobenzene as an oil (38 g). 



O 




5 Step 2. Synthesis of 4-(3-carboxyphenoxy)-l -nitrobenzene 

To a vigorously stirred mixture of 4-(3-ethoxycarbonylphenoxy)-l-nitrobenzene (5.14 g, 
17.9 irunol) in a 3:1 THF/water solution (75 mL) was added a solution LiOH'HjO (1.50 
g, 35.8 mmol) in water (36 mL). The resulting mixture was heated at 50 °C overnight, 
then cooled to room temp., concentrated under reduced pressure, and adjusted to pH 2 
10 with a 1M HC1 solution. The resulting bright yellow solids were removed by filtration 
and washed with hexane to give 4-(3-carboxyphenoxy)-l-nitrobenzene (4.40 g, 95%). 



O 




NHMe 



Step 3. Synthesis of 4-(3-(Af-methylcarbamoyl)phenoxy)-l-nitrobenzene 

A mixture of 4-(3-carboxyphenoxy)-l -nitrobenzene (3.72 g, 14.4 mmol), EDCI'HCl 
15 ■ (3.63 g, 18.6 mmol), iV-methylrnorplioline (1.6 mL, 14.5 mmol) and methylamine (2.0 M 
in THF; 8 mL, 16 mmol) in CH2CI2 (45 mL) was stirred at room temp, for 3 d, then 
concentrated under reduced pressure. The residue was dissolved in EtOAc (50 mL) and 
the resulting mixture was extracted 'vitb a 1M HC1 solution (50 mL). The aqueous layer 
was back-extracted with EtOAc (2 x 50 mL). The combined organic phases were washed 
20 with a saturated NaCl solution (50 mL), dried (Na 2 S04), and concentrated under reduced 
pressure to give 4-(3-(Af-methylcarbamoyl)phenoxy)-l -nitrobenzene as an oil (1.89 g). 



O 




NHMe 



Step 4. Synthesis of 4-(3-(Af-methylcarbamoyl)phenoxy)aniline 

A slurry of 4-(3-(7V-methylcarbamoyl)phenoxy)-l -nitrobenzene (1.89 g, 6.95 mmol) and 
25 5% Pd/C (0.24 g) in EtOAc (20 mL) was stirred under an H 2 atm (balloon) overnight. 



55 



WO 02/085859 



PCT/US02/12064 



The resulting mixture was filtered through a pad of Celite and concentrated under 
reduced pressure. The residue was purified by column chromatography (5% MeOH/95% 
CH2CI2). The resulting oil solidified under vacuum overnight to give 4-(3-(7V- 
methylcarbamoyl)phenoxy)aniline as a yellow solid (0.95 g, 56%). 

5 

B. General Methods of Urea Formation 

Bl. Reaction of a Heterocyclic Amine with an Aryl Isocyanate 

H H 

iV-(4-/er^-butylpyridyI)-iV , -(2,3-dichlorophenyl) urea: A solution of 2-amino-4-ter*- 
10 butylpyridine (192 mg) and 2,3-dichlorophenyl isocyanate (240 mg) in anh. toluene (15 
mL) was heated at 70 °C under argon for 24 h. The resulting mixture was diluted with 
EtOAc (200 mL) then washed with water (125 mL). The organic layer was dried 
(MgS04) and concentrated under reduced pressure to give a gum. Trituration of the gum 
with hexanes afforded A 7 -(4-terif-butylpyridyl)-7^ -(2,3-dichlorophenyl) urea as a white 
15 solid (394 mg, 91%): TLC (2:1 hexanes/ethyl acetate) R/ 0.40; FAB-MS m/z 338 
((M+H) + ). 

B2a. Reaction of a Heterocyclic Amine with iVjiV'-Carbonyldiimidazole Followed 
by Reaction with a Substituted Aniline 



O 

N N N . . 
20 H H 

iV-(4-^^-butylpyridyl)-A^*-(4-(4-pyridinylmethyl)phenyl urea: To a stirring solution of 
4-?ert-butyl-2-aminopyridine (192 mg) in anh. CH2CI2 (15 mL) under argon at 0 °C was 
added CDI (207 mg). The resulting solution was allowed to warm to ambient temp over 2 
h. To this mixture was added 4-(4-pyridylmethyl) aniline (prepared according to Method 
25 Al, 235 mg). The resulting solution was stirred at room temperature for 24 h, then was 





56 



WO 02/085859 



PCT/US02/12064 



quenched with water (125 mL). The resulting mixture was extracted with EtOAc (200 
mL). The organic layer was washed with water (100 mL), dried (MgSCU) and 
concentrated under reduced pressure. The residue was purified by chromatography (Si02, 
EtOAc) to afford A r -(4-fer^butylpyridyl)-A^'-(4-(4-pyridinylmethyl)phenyl urea as a white 
5 solid (200 mg, 43%): TLC (EtOAc) R/ 0.47; FAB-MS m/z 361 ((M+H) + ). 

B2b. Reaction of a Heterocyclic Amine with A^iV'-Carbonyldiimidazole Followed 
by Reaction with a Substituted Aniline 




1Q A r ^V'-(Bis(3-(2-methoxyquinolinyl)) urea): To a stirring solution of 3-amino-2- 

methoxyquinoline (138 mg) in anh CH 2 C1 2 (15 mL) under argon at 0 °C was added CDI 
(128 mg). The resulting solution was warmed to ambient temp over 1 h. After 16 h 4-(2- 
Af-Methylcarbamyl-4-pyridyloxy)aniline (175 mg) was added and the resulting yellow 
solution was stirred at room temperature under argon for 72 h. The solution was treated 

15 with water (125 mL) and the resulting mixture was extracted with EtOAc (2 x 150 mL). 
The combined organics were washed with a saturated NaCl solution (100 mL), dried 
(MgS04) and concentrated under reduced pressure. The residue was triturated with a 10% 
hexane/90% EtOAc solution. The resulting white crystals were washed with EtOAc. The 
resulting filtrate was purified by chromatography (Si0 2 , 50% EtOAc/50% hexane) to give 

20 W-(bis(3-(2-methoxyquinol:nyl)) urea) (30 mg, 20% yield): TLC (50% EtOAc/50% 
hexane) R/0.45: HPLC ES-MS m/z 375 ((M+H)~). 

B2c. Reaction of a Heterocyclic Amine with iV,iV'-CarbonyldimiidazoIe Followed 
by Reaction with a Substituted Aniline 




25 H H 



57 



WO 02/085859 



PCT/US02/12064 



jV_(4_^rt-Butylpyridyl)-iV'-(4-(4-chlorophenoxy)phenyl) urea: A solution of 4-tert- 
butyl-2-aminopyridine (0.177 g, 1.18 mmol, 1 equiv.) in 1.2 mL of anh. CH 2 C1 2 (1.2 mL) 
was added to CDI (0.200 g, 1.24 mmol, 1.05 equiv) and the mixture was allowed to stir 
under argon at room temperature 1 d. To the resulting solution was added 4-(4- 
5 chlorophenoxy)aniline (0.259 g, 1.18 mmol, 1 equiv.) in one portion. The resulting 

mixture was stirred at room temperature for 1 d, then was treated with a 1 0% citric acid 
solution (2 mL) and allowed to stir for 1 h. The resulting organic layer was extracted with 
EtOAc (3x5 mL). The combined organic layers were dried (MgSCu) and concentrated in 
vacuo. The residtant residue was treated with CH 2 C1 2 (10 mL) and a 1 N aqueous NaOH 
10 solution. This mixture was allowed to stir overnight. The resulting organic layer was 
extracted with CH 2 C1 2 (3x5 mL). The combined organic layers were (MgSCU) and 
concentrated in vacuo. The resultant solids were suspended in diethyl ether (10 mL) and 
sonicated for 1 5 minutes. The resulting white solids were dried to give N-{A-tert- 
butylpyridyl)-/V"-(4-(4-chlorophenoxy)phenyl) urea (42 mg, 9%): mp 198-199 °C. 

15 

B3. Reaction of Substituted Aniline with A'i/y'-Carbonyldiiimdazole Followed by 
Reaction with a Heterocyclic Amine 




H H 



JV-(2-(5-trifluoromethyl)pyridyloxy)-iV'-(3-(4-pyridylthio)phenyl) urea: A solution of 
20 3-(4-pyridylthib)a'mMe "(300 mg, 1 .48 mmoles) in CH 2 C1 2 (12 mL) was treated with CDI 
(253 mg, 1 .56 mmoles). The solution was stirred at room temperature and under argon 
for 2 h. The resulting mixture was treated with 2-amino-5-(trifluoromethyl)pyridine (238 
mg, 1 .47 mmoles) and heated at 40 °C overnight. The reaction mixture was then diluted 
withEtOAc (25 mL), washed with water (10 mL) and a saturated NaCl solution m(25 
25 mL), dried (MgSCu), and concentrated under reduced pressure. The residue was purified 
by column chromatography (Si0 2 ; gradient from 70% EtOAc/30% CH 2 C1 2 to 100% 
EtOAc to give 7Y-(2-(5-trifiuoromethyl)pyridyloxy)-iV''-(3-(4-pyridylthio)phenyl) urea 
afforded (103 mg): TLC (50% EtOAc/50% CH 2 C1 2 ) R/0.33; 'H-NMR (DMSO-d 6 ) 6.06 
(d, J=6Bz, 2H), 7.25 (dt, J=1.2,7.8 Hz, 1H), 7.48 (t, .7=8.1 Hz, 1H), 7.59-7.63 (m, 1H), 



58 



WO 02/085859 



PCT/US02/12064 



7.77 (d, 7=8.7 Hz, 1H), 7.86 (t, 7=1.8 Hz, 1H), 8.12 (dd, 7=2.7,9.3 Hz, 1H), 8.37 (d, 7=6.3 
Hz, 2H), 8.67 (bs, 1H), 9.88 (s, 1H), 10.26 (s, 1 H); FAB-MS m/z 391 ((M+H) + ). 

B4. Reaction of a Heterocyclic Amine with Phosgene, Followed by Reaction "with 
5 a Substituted Aniline 




H H 



A r -(3-(2-methoxyquinolinyl)-A r, -(4-(4-(2-A' : -Methylcarbamyl-4-pyridyloxy)phenyl) 
urea: To a stirring solution of phosgene (20% in toluene, 1.38 mL) in anh. CH2CI2 (20 
ml) at 0 °C under argon was added anh. pyridine (207 mg) followed by 3-amino-2- 

10 methoxyquinoline (456 mg). The resulting solution was warmed to ambient temperature 
over 1 h, then concentrated in vacuo at ambient temperature to give a white solid. The 
solid was dried under vacuum for 15 min then suspended in anh toluene (20 mL). To the 
resulting slurry was added 4-(4-(2-(methylcarbamoyl)pyridyloxy)aniline (prepared 
according to Method A2, 300 mg) and the reaction heated under argon at 80 °C for 20 h. 

15 The resulting mixture was diluted with water (200 mL), then treated with a saturated 
NaHC0 3 solution (10 mL) and extracted with EtOAc (2 x 300 mL). The combined 
organic layers were washed with a saturated NaCl solution (100 mL), dried (MgS04) and 
concentrated under reduced pressure. The solid yellow residue was purified by 
chromatography (Si0 2 , gradient from 50% EtOAc/50% hexane to 100% EtOAc), 

.20 followed bylecrystailization from diethyl ether and hexane to give A^(3-(2- 

methoxyqiiinolinyl)-iV"'-(4-(4-(2-^/'-Methylcarbamyl-4-pyridyloxy)phenyl) urea as a white 
solid (140 mg, 25%): TLC (EtOAc) R/0.52; FAB-MS m/z 430 ((M+H) 4 ). 

B5a. Reaction of an Aniline with iV,iV'-Carbonyl Diimidazole Followed by 

25 Addition of a Second Aniline. 



MeHN 




NHMe 



H H 



59 



WO 02/085859 



PCT/US02/12064 



Bis(4-(2-(iV-methylcarbamoyl)-4-pyridyloxy)phenyl) Urea 

To a stirring solution of 3-amino-2-methoxyquinoline (0.14 g) in anhydrous CH2CI2 (15 
mL) at 0 C was added CDI (0.13 g). The resulting solution was allowed to warm to room 
temp, over 1 h then was stirred at room temp, for 16 h. The resulting mixture was treated 
5 with 4-(2-(A r -methylcarbamoyl)-4-pyridyloxy)aniline (0.18 g). The resulting yellow 
solution stirred at room temp, for 72 h, then was treated with water (125 mL). The 
resulting aqueous mixture was extracted with EtOAc (2 x 150 mL). The combined 
organic phases were washed with a saturated NaCl solution (100 ml), dried (MgSC>4) and 
concentrated under reduced pressure. The residue was triturated (90% EtO Ac/10% 
10 hexane). The resulting white solids were collected by filtration and washed with EtOAc 
to give bis(4-(2-(7V-methylcarbamoyl)-4-pyridyloxy)phenyl) urea (0.081 g, 44%): TLC 
(100% EtOAc) R/0.50; l H NMR (DMSO-d 6 ) 2.76 (d, J=5.1 Hz, 6H), 7.1-7.6 (m, 
12H), 8.48 (d, J=5.4 Hz, 1H), 8.75 (d, J=4.8 Hz, 2H), 8.86 (s, 2H); HPLC ES-MS m/z 
513 ((M+H) + ). 

15 

B5b. Reaction of an Isocyanate with an Aniline. 

CF 3 " 

1 H H 
OMe 

7V-(2-Methoxy-5-(trifluoromethyl)phenyI-A f '-(4-(l,3-dioxoisomdoIin-5-yloxy)phenyl) 

. . . . Urea. 

20 To a stirring solution of 2-methoxy-5-(trifluoromethyl)phenyl isocyanate (0.10 g, 0.47 

mmol) in CH2CI2 (1.5 mL) was added 5-(4-aminophenoxy)isoindoline-l,3-dione (Method 
A3, Step 3; 0.12 g, 0.47 mmol) in one portion. The resulting mixture Was stirred for 12 h, 
then was treated with CH2CI2 (10 mL) and MeOH (5 mL). The resulting mixture was 
sequentially washed with a IN HC1 solution (15 mL) and a saturated NaCl solution (15 

25 mL), dried (MgSCU) and concentrated under reduced pressure to afford iV-(2-methoxy-5- 
(trifluoromethyl)phenyl-iV'-(4-(l,3-dioxoisoindolin-5-yloxy)phenyl) urea as a white solid 
(0.2 g, 96%): TLC (70% EtOAc/30% hexane) R/0.50; ! H NMR (DMSO-d 6 ) 3.95 (s, 

60 




WO 02/085859 



PCT/US02/12064 



3H), 7.31-7.10 (m, 6H), 7.57 (d, J=9.3Hz, 2H), 7.80 (d, J=8.7 Hz, 1H), 8.53 (br s, 2H), 
9.57 (s, 1H), 11.27 (br s, 1H); HPLC ES-MS 472.0 ((M+H) + , 100%). 

B6. Reaction of an Aniline with Phosgene Followed by Addition of a 

5 Second Aniline. 




H H 



A r -(3-(2-methoxyquinolinyl)-iY'-(4-(4-(2-A ? -Methylcarbamyl-4-pyridyloxy)phenyl) 
Urea 

To a stirring solution of phosgene (20% in toluene, 1.38 mL) in anh. CH2CI2 (20 ml) at 0 
10 °C under argon was added anh. pyridine (207 mg) followed by 3-amino-2- 

methoxyquinoline (456 mg). The resulting solution was warmed to ambient temperature 
over 1 h, then concentrated in vacuo at ambient temperature to give a white solid. The 
solid was dried under vacuum for 15 min then suspended in anh toluene (20 mL). To the 
resulting slurry was added 4-(4-(2-(methylcarbamoyl)pyridyloxy)aniline (prepared 
15 according to Method A2, 300 mg) and the reaction heated under argon at 80 °C for 20 h. 
The resulting mixture was diluted with water (200 mL), then treated with a saturated 
NaHC0 3 solution (10 mL) and extracted with EtOAc (2 x 300 mL). The combined 
organic layers were washed with a saturated NaCl solution (100 mL), dried (MgS04) and 
concentrated under reduced pressure. The solid yellow residue was purified by 
20 chromatography (Si0 2 , gradient from 50% EtO Ac/50% hexane to 100% EtOAc), 
followed by recrystallization from diethyl ether and hexane to give iy-(3-(2- 
methoxyquinolinyl)-iV'-(4-(4-(2-Ar-Methylcarbamyl-4-pyridyloxy)phenyl) urea as a white 
solid (140 mg, 25%): TLC (EtOAc) R/0.52; FAB-MS m/z 430 ((M+H) + ). 

25 

SPECIFIC COMPOUND PREPARATIONS 

Descriptions of the detailed preparative steps used to prepare the specific 
compounds listed in Tables 1 -8 are provided below. Many of the compounds listed in the 

61 



WO 02/085859 



PCT/US02/12064 



Tables can be synthesized following a variety of methods. The specific examples below 
are therefore provided by way of illustration only and should not be construed to limit the 
scope of the invention in any way. 

5 Entry 1 : 4-tert-Butyl-2-aimnopyridine was reacted with 4-tolyl isocyanate according to 
Method Bl to afford the urea. 

' Entry 2: 4-tert-Butyl-2-ammopyridine was reacted with 4-fluorophenyl isocyanate 
according to Method Bl to afford the urea. 

10 

Entry 3: A r -(4-z'er^Butylpyridinyl)-A'''-(2,3-dichlorophenyl) urea was prepared according 
to Method Bl. 

Entry 4: 4-^ert-Butyl-2-aminopyridine was reacted with 1-naphthyl isocyanate according 
15 to Method Bl to afford the urea. 

Entry 5: A r -(4-rerr-Butylpyridyl)-jV'-(4-(4-pyridinylmethyl)phenyl urea was prepared 
according to Method B2a. 

20 Entry 6: 4-ter£-Butyl-2-aminopyridine was reacted with 4-phenoxyaniline according to 
Method B2c to afford the urea. 

Entry 7: 4-ter^Butyl-2-aminopyridine was reacted with 4-(4-methylphenoxy)aniline 
according to Method B2c to afford the urea. 

25 

Entry 8: 7V"-(4-tert-Butylpyridyl)-iV"-(4-(4-chlorophenoxy)phenyl) urea was prepared 
according to Method B2c. 

Entry 9: 4-tert-Buryl-2-aminopyridine was reacted with 4- (4-methoxyphenoxy) aniline 
30 according to Method B2c to afford the urea. 



62 



WO 02/085859 



PCT/US02/12064 



Entry 10: 4-(4-Aminophenoxy)pyridine was prepared starting from 4-hydroxypyridine 
and l-bromo-3-nitrobenzene according to Method A3F. 4-tert-Butyl-2-aminopyridine 
was reacted with 4-(4-aminophenoxy)pyridine according to Method B2a to afford the 
urea. 

5 

Entry 1 1 : 4-(4-Pyridylthio)aniline was prepared starting from 4-aminothiophenol and 4- 
chloropyridine hydrochloride according to Method A4a. 4-tert-Butyl-2-airrinopyridine 
was reacted with 4-(4-pyridylthio)aniline according to Method B2c to afford the urea. 

10 Entry 12: 4-(4-Pyridylthio)aniline was prepared starting from 4-aminothiophenol and 4- 
chloropyridine hydrochloride according to' Method A4a. 4-tert-Butyl-2-aminopyridine 
was reacted with 3-(4-pyridylthio)aniline according to Method B2c to afford the urea. 

Entry 13: 2-Amino-5-(trifluoromethyl)pyridine and 4-(4-pyridylmethyl)aniline were 
15 reacted according to Method B3 to afford the urea. 

Entry 14: iV-(2-(5-Trifluoromethyl)pyridyloxy)-7^ -(3-(4-pyridylthio)phenyl) urea was 
prepared according to Method B3. 

20 Entry 15: 3-Aminoisoquinoline was reacted with 4-tolyl isocyanate according to Method 
Bl to afford the urea. 

Entry 16: 3-Aminoisoquinoline was reacted with 4-fiuorophenyl isocyanate according to 
Method B 1 to afford the urea. 

25 

Entry 17: 3-Aminoisoquinoline was reacted with 2,3-dichlorophenyl isocyanate according 
to Method Bl to afford the urea. 

Entry 18: 3-Aminoisoquinoline was reacted with 1-naphthyl isocyanate according to 
30 Method B 1 to afford the urea. 



63 



WO 02/085859 



PCT/US02/12064 



Entry 19: 3-Aminoisoquinoline was reacted with 4-(4-pyridylmethyl)amline according to 
Method B2a to afford the urea. 

Entry 20: 4-(4-Aminophenoxy)pyridine was prepared starting from 4-hydroxypyridine . 
5 and l-bromo-3 -nitrobenzene according to Method A3f. 3-Aminoisoquinoline was reacted 
with 4-(4-aminophenoxy)pyridine according to Method B2a to afford the urea. 

Entry 21: 3-Aminoquinoline and 4-(4-pyridylmethyl)aniline were reacted according to 
Method B3 to afford the urea. 

10 , 

Entry 22: A r ,A r '-(Bis(3-(2-methoxyquinolinyl)) urea) was prepared according to Method 
B2b. 

Entry 23:3-Amino-2-methoxyquinoline and 4-(4-pyridylmethyl)aniline were reacted 
15 according to Method B3 to afford the urea. 

Entry 24: 3-Amino-2-methoxyquinoline was reacted with 4-(4-pyridylcarbonyl)aniline 
according to Method B4 to afford the urea. 

20 Entry 25: 4-(4-Pyridyloxy)aniline was prepared starting from 4-hydroxypyridine and 1- 
fluoro-4-nitrobenzene according to Method A3d. 3-Amino-2-methoxyquinoline was 
reacted with 4-(4-pyridyloxy)aniline according to Method B2c to afford the, urea. 

Entry 26: 3-Amino-2-methoxyquinoline was reacted with 4-((4- 
25 methoxyphenyl)methylamino)aniline according to Method B4 to afford the urea. 

Entry 27: 3-(4-Pyridylthio)aniline was prepared according to Method A4a. 3-Amino-2- 
methoxyquinoline and 3-(4-pyridylmethyl)aniline were reacted according to Method B3 
to afford the urea. 

30 



64 



WO 02/085859 



PCT/US02/12064 



Entry 28: 4-(4-Pyridyloxy)aniline was prepared starting from 4-hydroxypyridine and 1- 
fluoro-4-nitrobenzene according to Method A3d. l-(4-Methylpiperazinyl)-3- 
aminoisoquinoline was reacted with 4-(4-aminophenoxy)pyridine according to Method 
B2a to afford the urea. 

5 

Entry 104: 4-(4-(2-(A''-Methylcarbamoyl)pyridyloxy)aniline was prepared according to 
Method A10. 3-Amino-2-methoxyquinoline was reacted with 4-(4-(2-(iV- 
methylcarbamoyl)pyridyloxy)aniline according to Method B4 to afford the urea. 

10 Entry 1 05 : 4-(3-7V-Methylcarbamoylphenoxy)aniline was prepared according to Method 
A14. 3-Amino-2-methoxyquinoline was reacted with 4-(3-iV- 
methylcarbamoylphenoxy)aniline according to Method B4 to afford the urea. 

Entry 106: 4-Chloropyridine-2-carbonyl chloride was reacted with isopropylamine 
15 according to Method A 10, Step 3b. The resulting 4-chloro-iV-isopropyl~2- 

pyridinecarboxamide was reacted with 4-aminophenol according to Method A10, Step 4 
to give 4-(2-(iV-isopropylcarbamoyl)-4-pyridyloxy)aniline. 3-Amino-2-methoxyquinoline 
was reacted with 4-(2-(A^-isopropylcarbarnoyl)-4-pyridyloxy)aniline according to Method 
B5b to afford the urea. 

20 

Entry 107: 4-Chloropyridine-2-carbonyl chloride HC1 salt was reacted with ammonia 
according to Method A10, Step 3b to form 4-chloro-2-pyridinecarboxamide. 4-Chloro-2- 
pyridinecarboxamide was reacted with 4-aminophenol according to Method A10, Step 4 
using DMAC in place of DMF to give 4-(2-carbamoyl-4-pyridyloxy)aniline. 4-(2- 
25 Carbamoyl-4-pyridyloxy)aniline was reacted with 4-(2-(iV-isopropylcarbamoyl)-4- 
pyridyloxy)aniline according to Method B6 to afford the urea. 

Entryl08: 4-Chloro-iV-methyl-2-pyridhiecafboxamide was synthesized according to 
Method A10, Step 3b. 4-Chloro-Af-methyl-2-pyridinecarboxamide was reacted with 4- 
30 aminophenol according to Method A10, Step 4 using DMAC in place of DMF to give 4- 
(2-(iV-methylcarbamoyl)-4-pyridyloxy)aniline. 3-Amino-2-methoxyquinoline was 



65 



WO 02/085859 



PCT/US02/12064 



reacted with 4-(2-(A r -methylcarbamoyl)-4-pyridyloxy)ariiline according to Method B6 to 
afford the urea. 

Entry 109: 4-Chloropyridine-2-carbonyl chloride HC1 salt was reacted with ammonia 
5 according to Method A10, Step 3b to form 4-chloro-2-pyridinecarboxamide. 4-Chloro-2- 
pyridinecarboxarnide was reacted with 3-aminophenol according to Method A10, Step 4 
using DMAC in place of DMF to give 3-(2-carbamoyl-4-pyridyloxy)aniline. 3-Amino-2- 
methoxyquinoline was reacted with 3-(2-carbamoyl-4-pyridyloxy)aniline according to 
Method B6 to afford the urea. 

10 

Entryl 10: 4-Chloro-iV-methyl-2-pyridinecarboxamide, which was synthesized according 
to Method A10, Step 3a, was reacted with 3-aminophenol according to Method A10, Step 
4 using DMAC in place of DMF to give 3-(-2-(iV-methylcarbamoyl)-4- 
pyridyloxy)aniline. 3-Amino-2-methoxyquinoline was reacted with 3-(-2-(N- 
15 methylcarbamoyl)-4-pyridyloxy)aniline according to Method B6 to afford the urea. 

Entry 111: 4-(4-(3-(A r -Methylcarbamoyl)-2-methoxyphenoxy)aniline was prepared 
according to Method A13. 3-Amino-2-methoxyquinoline was reacted with 4-(4-(3-(JV- 
Methylcarbamoyl)-2-methoxyphenoxy)aniline was according to Method B6 to afford the 
20 urea. 

Entry 112: 5-(4-Aminophenoxy)isoindoline-l,3-dione was prepared according to Method 
All. 3-Amino-2-methoxyquinoline was reacted with 5-(4-Aminophenoxy)isoindoline- 
1,3-dione was according to Method B5b to afford the urea. 



66 



WO 02/085859 



PCT/US02/12064 



The following compounds have been synthesized according to the General Methods listed 
above: 



Table 1. 



4-ter?-Butyl-2-pyridyl Ureas 




N 



H H 















TLC 


Mass Spec. 








mp 




TT C 


OUiVCIlL 


|_OUUivCJ 


Entry 


R 




(°C) 


(min.) 




System 




1 


— (^ r ~^)— Me 






0.51 


33% 
EtOAc/ 
67% 
aexane 


284 

(M+H)+ 
(FAB) 


2. 










JJ /o 

57% 
biexane 


LOO 

(FAB) 


3 


CI CI 






0.40 


33% 


338 










EtOAc / 

67% 

hexane 


(M+H)+ 
(FAB) 


4 








0.46 


33% 
EtOAc / 
67% 
hexane 


320 

(M+H)+ 
(FAB) 


5 










0.47 


100% 
EtOAc 


361 

(M+H)+ 
(FAB) 


6 






179- 
180 




0.58 


5% MeOH 
l 95% 
CH2C12 


362 

(M+H)+ 
(FAB) 


• 7 






190- 
191 




0.46 


5% MeOH 
' 95% 
CH2C12 


376 

(M+H)+ 
(FAB) 


8 






198 - 




0.76 


5% MeOH 


396 








199 






' 95% 
CH2C12 


(M+H)+ . 
(FAB) 


9 






189- 
193 




0.43 


5% MeOH 
' 95% 
CH2C12 


392 

(M+H)+ 
(FAB) 



67 



WO 02/085859 



PCT/US02/12064 



1 A 

10 


J 


c 




pi 






U.4U 


1 C\C\0/ 

EtOAc 


(M+H)+ 
(FAB) 


1 1 
A i 


J 


0 






212 






j /o ivicwxi. 

' 95% 
CH2C12 


(M+H)+ 

(HPLC 

ES-MS) 


12 




0 




o 


196- 
197 




0.37 


5% MeOH 
' 95% 
CH2C12 


379 . 

(M+H)+ 

(FAB) 



68 



WO 02/085859 



PCT/US02/12064 



Table 2. 5-(Trifluoromethyl)-2-pyridyl Ureas 




H H 



Entry 




mp 
(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


13 


JCTO 






0.34 


30% 
acetone / 
70% 
CH2C12 


373 

(M+H)+ 
(FAB) 


14 








0.33 


50% EtOAc 
/ 50% 
hexane 


391 

(M+H)+ 
(FAB) 



69 



WO 02/085859 



PCT/US02/12064 



Table 3. 3-IsoquinolyI Ureas 




Entry 


R 


mp 
(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


15 








0.60 


50% 
EtOAc / 
50% 
tiexane 


278 

(M+HJ+ 
(FAB) 


16 








0.52 


50% 
EtOAc / 
50% 
tiexane 


(M+H)+ 
(FAB) 


17 


CI CI 






0.75 


50% 
EtOAc / 
50% 
hexane 


322 

(M+H)+ 
(FAB) 


18 








0.57' 


50% 
EtOAc / 
50% 
hexane 


314 

(M+H)+ 
(FAB) 


19 








0.35 


100% 
EtOAc 


355 

(M+H)+ 
(FAB) 


20 








0.27 


100% 
EtOAc 


357 

(M+H)+ 
(FAB) 



70 



WO 02/085859 



PCT/US02/12064 



Table 4. 3-Quinolyl Ureas 




H H 



Entry 




mp 
(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


21 








0.25 


60% 
acetone / 
40% 
PH2C12 


355 

(M+H)+ 
(FAB) 



71 



WO 02/085859 



PCT/US02/12064 



Table 5. 2-Methoxy-3-quinolyl Ureas 




Entry 


R 


mp 
(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


22 








0.45 


50% 
EtOAc / 
50% 
tiexane 


375 • 
(M+H)+ 
(HPLC 
ES-MS) 


23 


xro. 






0.56 


50% 
EtOAc / 
50% 
hexane 


385 

(M+H)+ 
(FAB) 


24 


o 






0.45 


100% 
EtOAc 


399 

(M+H)+ 
(FAB) 


25 


xro 


207- 
208 




0.24 


5% MeOH 
' 95% 
CH2C12 


387 

(M+H)+ 
(FAB) 


26 ■ 


Me 


126- 
130 










27 


'AO 






0.39 


50% 

acetone / 

50% 

CH2C12 


403 

(M+H)+ 
(FAB) 



72 



WO 02/085859 



PCT/US02/12064 



Table 6. 



3-QuinoIyI Ureas 



Me' 




Entry 




mp 
(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


2S 








0.20 


30% 
MeOH / 
70% 
EtOAc 


455 

(M+H)+ 

(HPLC 

ES-MS) 



Table 7. 



Additional Isoquinolyl Ureas 



104 


H H 






0.30 


1% Et3N/ 

99% 

EtOAc 


414 

(M+H)+ 

(HPLC 

ES-MS) 


A2 
C5 


Table 8. 2-Methoxy-3-quinolyl Ureas with. Omega Carbonyls 

■ H H J-.H 
OMe 


Entry 


R 


mp 

(°C) 


HPLC 
(min.) 


TLC 


TLC 
Solvent 
System 


Mass Spec. 
[Source] 


Synth. 
Method 


105 


O 

V-NH 

-o-o w 


213- 
214 




0.20 


5% 

MeOW 

95% 

CHC13 


443 
(FAB) 


A13 
C2c 


106 


O 

y — nh 


244- 
245 










A3 C2c 



73 



WO 02/085859 



PCT/US02/12064 



107 


o 

_/ NH2 






0.52 


100% 
EtOAc 


430 

(M+HH- 
(FAB) 


A2 
C5 


108 


o 

V-NH 

-0-°-vv 






0.55 


100% 
EtOAc 


444 

(M+H)+ 
(FAB) 


A2 
C5 


109 








0.30 


100% 
EtOAc 


430 

(M+H)+ 
(FAB) 


A2 
C5 


110 


\={ /={ Me 






0.60 


100% 
EtOAc 


444 

(M+H)+ 
' (FAB) 


A2 
C5 


111 


O x Me 

y — nh 

(/ ^ — O — <\ /> — OMe 


144- 
146 










A8 
C5 


112 


-O-Qr 

0 












A3 
C2c 



BIOLOGICAL EXAMPLES 

P38 Kinase Assay: 

The in vitro inhibitory properties of compounds were determined using a p38 
kinase inhibition assay. P38 activity was detected using an in vitro kinase assay run in 
96-well microtiter plates. Recombinant human p38 (0.5 j-ig/mL) was mixed with substrate 
(myelin basic protein, 5 ug/mL) in kinase buffer (25 mM Hepes, 20 mM MgCk and 150 
mM NaCl) and' compound. One |j,Ci/well of 33 P-labeled ATP (10 pM) was added to a 
final volume of 100 uL. The reaction was run at 32 °C for 30 min. and stopped with a 1M 
HC1 solution. The amount of radioactivity incorporated into the substrate was determined 
by trapping the labeled substrate onto negatively charged glass fiber filter paper using a 



74 



WO 02/085859 



PCT/US02/12064 



1% phosphoric acid solution and read with a scintillation counter. Negative controls 
include substrate plus ATP alone. 

All compounds exemplified displayed p38 IC 50 s of between 1 nM and 10 uM. 

5 LPS Induced TNFcc Production in Mice: 

The in vivo inhibitory properties of selected compounds were determined using a 
murine LPS induced TNFcc production in vivo model. BALB/c mice (Charles River 
Breeding Laboratories; Kingston, NY) in groups of ten were treated with either vehicle or 
compound by the route noted. After one hour, endotoxin (E. coli lipopolysaccharide 

10 (LPS) 100 jLLg) was administered intraperitoneally (i.p.). After 90 min, animals were 
euthanized by carbon dioxide asphyxiation and plasma was obtained from individual 
animals by cardiac puncture into heparinized tubes. The samples were clarified by 
centrifugation at 12,500 x g for 5 min at 4 °C. The supernatants were decanted to new 
tubes, which were stored as needed at -20 °C. TNFa levels in sera were measured using 

15 • a commercial murine TNF ELIS A kit (Genzyme). 

The preceding examples can be repeated with similar success by substituting the 
generically or specifically described reactants and/or operating conditions of this 
invention for those used in the preceding examples. 

20 

From the foregoing discussion, one skilled in the art can easily ascertain the 
essential characteristics of this invention and, without departing from the spirit and scope 
thereof, can make various changes and modifications of the invention to adapt it to 
various usages and conditions. 

25 



75 



WO 02/085859 



PCT/US02/12064 



WHAT IS CLAIMED IS: 

1. A method of treating a disease mediated by p38 within a host, said method 
comprising administering to said host a compound of Formula I: 

A - D - B (I) 

or a pharmaceutic ally acceptable salt thereof, wherein 

D is -NH-C(0)-NH-, 

A is a substituted or unsubstituted pyridyl, quinolinyl or isoquinolinyl group, 
B is a substituted or unsubstituted, up to tricyclic aryl or heteroaryl moiety of 
up to 50 carbon atoms with a cyclic structure bound directly to D, containing. at least 5 
cyclic members with 0-4 members of groups consisting of nitrogen, oxygen and sulfur, 

wherein the substituents for A are selected from the group consisting of halogen, 
up to per-halo, and Wn, where n is 0-3 and each W is independently selected from the 
group consisting of 

Ci-io alkyl, Ci-io alkoxy, C3-10 cycloalkyl having at least a five cyclic members 
and 0-3 heteroatoms selected from N, S and O; C2-10 alkenyl, C1-10 alkenoyl, C6-C14 aryl, 
C7-C24 alkaryl, C7-C24 aralkyl, C3-C12 heteroaryl having at least 5 cyclic members and 1-3 
heteroatoms selected from O, N and S, C4-C24 alkheteroaryl having at least 5 cyclic 
members and 1-3 heteroatoms selected from O, N and S; 

substituted C1-10 alkyl, substituted Ci-io alkoxy, substituted C3-10 cycloalkyl 
having at least 5 cyclic members and 0-3 heteroatoms selected from N, S and O; 
substituted C2-10 alkenyl, substituted C M o alkenoyl, substituted C6-C14 aryl, substituted 
C7-C24 alkaryl, substituted C7-C24 aralkyl, substituted C3-C12 heteroaryl having at least 5 
members and 1-3 heteratoms selected from O, N and S, substituted C4-C24 alkheteroaryl 
having at least 5 members and 1 -3 heteroatoms selected from O, N and S, 

-CN, -C0 2 R 7 , -C(0)NR 7 R 7 ', -C(0)-R 7 , -N0 2 , -OR 7 , -SR 7 , -NR 7 R 7 ', - 
NR 7 C(0)OR 7 ', -NR 7 C(0)R 7 ', with each R 7 and R 7 ' independently selected from 



76 



WO 02/085859 



PCT/US02/12064 



hydrogen, Ci_i 0 alkyl, Clio alkoxy, C 2 -io alkenyl, Clio alkenoyl, up to per halosubstituted 
Ci-io alkyl, up to per halosubstituted Ci-io alkoxy, up to per halosubstituted C2-10 alkenyl 
and up to per halosubstituted Cm 0 alkenoyl, C3-C10 cycloalkyl having at least 5 cyclic 
members and 0-3 heteroatoms selected from O, S and N, C6-C14 aryl, C3-C10 hetaryl 
having at least 6 cyclic members and 0-3 heteroatoms selected from O, S and N, up to per 
halo substituted C3-C10 cycloalkyl having at least 5 cyclic members and 0-3 heteroatoms 
selected from O, S and N, up to per halo substituted Cs-Cu aryl and up to per halo 
substituted C3-C10 hetaryl having at least 6 cyclic members and 0-3 heteroatoms selected 
from O, S and N, 

where W is a substituted group, it is substituted by halogen, up to per halo, or by 
one or more substituents independently selected from the group consisting of -CN, - 
C0 2 R 7 , -C(0)NR 7 R 7 ', -C(0)-R 7 , -N0 2 , -OR 7 , -SR 7 , -NR 7 R 7 ', -NR 7 C(0)OR 7 ', and - 
NR 7 C(0)R 7 ', wherein R 7 and R 7 ' are independently as defined above; 

wherein the sxibstituents for B are selected from the group consisting of halogen, 
up to per-halo, and J n , where n is 0-3 and each J is independently selected from the group 
consisting of -CN, -C0 2 R 7 , -C(0)NR 7 R 7 ', -C(0)-R 7 , -NO2. -OR 7 , -SR 7 , -NR 7 R 7 ', - 
NR 7 C(0)OR 7 ', -NR 7 C(0)R 7 ', with each R 7 and R 7 ' independently as denned for W 
above, C1-10 alkyl, C1-10 alkoxy, C3-10 cycloalkyl having at least five cyclic members and 
0-3 heteroatoms, C2-10 alkenyl, Cmo alkenoyl, C 6 .u aryl, C3-12 hetaryl having at least a 
five cyclic members and 1-3 heteroatoms selected from N, S and O, C7-24 aralkyl, C 7 . 2 4 
alkaryl, C4-C23 alkyheteroaryl having at least six members and 1-3 heteroatoms sleeted 
from O, N and S, substituted C1-10 alkyl, substituted C1-10 alkoxy, substituted C3-10 
cycloalkyl having at least a five-members and 0-3 heteroatoms selected from N, S and O, 
substituted C 2 -io alkenyl, substituted Ci- 10 alkenoyl, substituted C 6 - C 14 aryl, substituted 
C3-12 hetaryl having at least five cyclic members and 1-3 heteroatoms selected from N, S 
and O, substituted C7.24 alkaryl, substituted C 7 -C 2 4 aralkyl and substituted C 4 -C 23 
alkyheteroaryl having at least six members and 1-3 heteroatoms sleeted from O, N and S, 
and -Q-Ar, 



77 



WO 02/085859 



PCT/US02/12064 



wherein Q is a single bond, -O-, -S-, -N(R 7 )-, -(CH 2 ) m -, -C(O)-, -CH(OH)-, - 
(CH 2 ) ra O-, -(CH 2 ) m S-, -(CH 2 ) m N(R 7 )-, -0(CH 2 ) m - CHX\ -CX a 2 -, -S-(CH 2 ) ra - and - 
N(R 7 )(CH 2 ) m -, wherein m= 1-3, andX a is halogen; and 

Ar is a 5- or 6-member aromatic structure containing 0-2 members selected from 
the group consisting of nitrogen, oxygen and sulfur, which is optionally substituted by 
halogen, up to per-halo, and optionally substituted by Z nl , wherein nl is 0 to 3 and each Z 
is independently selected from the group consisting of -CN, -C0 2 R 7 , -COR 7 , - 
C(0)NR 7 R 7 ', -OR 7 , -SR 7 , -N0 2 , -NR 7 R 7 ', -NR 7 C(0)R 7 ', and -NR 7 C(0)OR 7 , with R 7 and 
R 7 ' as defined above for W, Ci-io alkyl, Ci-io alkoxy, C2-10 alkenyl and Ci-i 0 alkenoyl, 
halo substituted C1.10 alkyl up to per halo, halo substituted Cmo alkoxy up to per halo, 
halosubstituted C 2 -io alkenyl \ip to per halo and halo substituted C1-10 alkenoyl up to per 
halo, and 

where J is a substituted group, it is substituted by halogen, up to per halo, or by 
one or more substitutents independently selected from the group consisting of -CN, - 
C0 2 R 7 , -COR 7 , -C(0)NR 7 R 7 ', -OR 7 , -SR 7 , -N0 2 , -NR 7 R 7 ', -NR 7 C(0)R 7 ', and - 
NR 7 C(0)OR 7 ', with R 7 and R 7 ' as defined above for W. 

2. A method of claim 1 wherein B of formula I is 

a substituted or unsubstituted bridged cyclic structure of up to 30 carbon atoms, 
a substituted or unsubstituted 6 member cyclic aryl moiety or a 5-6 member cyclic 
hetaryl moiety or 

a substituted or unsubstituted fused ring structure of from 2-3 fused aryl rings, • • 
hetaryl rings or both aryl and hetaryl rings. 

3. A method as in claim 2 wherein B of formula I is a bridged cyclic structure of 
the formula -L-(ML l ) q , where L is a 5 or 6 membered cyclic structure bound directly to 
D, L 1 comprises a substituted cyclic moiety having a least 5 members, M is a bridging 
group having at least one atom, q is an integer of from 1-3, and each cyclic structure of L 
and L 1 contains 0-4 members of the group consisting of nitrogen, oxygen and sulfur, 
wherein L 1 is substituted by at least one substituent selected from the group consisting of 



a) 
b) 

c) 



78 



WO 02/085859 



PCT/US02/12064 



-S0 2 R a , -S0 2 NR a R b , -C(0)R a , -C(0)NR a R b and -C(NR a )R b , wherein R a and R b are 
independently hydrogen or a carbon based moiety. 

4. A method of claim 3 wherein M in the formula — L-fML^q, is selected from the 
group consisting of-O-, -S-, -N(R 7 )-, J (CH 2 ) m -, -C(O)-, -CH(OH)-, -( CH 2 ) ra O-, . 

-( CH 2 ) m S-, -( CH 2 ) m N(R 7 )-, -0(CH 2 ) m -; -CHX\ -CX a 2 -, -S-(CH 2 ) ra -, -CR a R b -, and 
— N(R 7 )(CH2) m -, where m=l-3, X a is halogen, q is 1, and R a and R b are as defined in claim 
3, and R 7 is selected from the group consisting of hydrogen, Ci-io alkyl, Ci. 10 alkoxy, C 2 . 
io alkenyl, Ci-io alkenoyl, up to per halosubstituted Cmo alkyl, up to per halosubstituted 
Ci-io alkoxy, up to per halosubstituted C 2 -io alkenyl and up to per halosiibstituted Ci-io 
alkenoyl. 

5. A method of claim 4 wherein L in the formula -L-(ML l ) q for B is a 
substituted 6 member cyclic aryl moiety, a substituted 5 or 6 member heterocyclic 
moiety, an unsubstituted 6 member cyclic aryl moiety, or an unsubstituted 5 or 6 member 
heterocyclic moiety, and L 1 in the formula -L-(ML') q for B, is a substituted aryl moiety 
having at least 6 cyclic members, an unsubstituted aryl moiety having at least 6 cyclic 
members, a substituted hetaryl moiety having at least 6 cyclic members or an 
unsubstituted hetaryl moiety having at least 6 cyclic members, said heterocyclic and 
hetaryl moieties having 1 to 4 members selected from the group of hetero atoms 
consisting of nitrogen, oxygen and sulfur with the balance of the hetaryl and heterocyclic 
moiety being carbon. ... 

6. A method of claim 1 wherein B is phenyl, substituted phenyl, pyridinyl, 
substituted pyridinyl, pyrimidinyl, substituted pyrimidinyl, quinolinyl, substituted 
quinolinyl, isoquinolinyl, substituted isoquinolinyl or of the formula -L(ML l ) q , wherein 
L 1 and L in formula— L(ML l ) q for B, are each independently selected from the group 
consisting of thiophene, substituted thiophene, phenyl, substituted phenyl, napthyl, 
substituted napthyl, pyridinyl, substituted pyridinyl, pyrimidinyl, substituted pyrimidinyl, 
quinolinyl substituted quinolinyl, isoquinolinyl and substituted isoquinolinyl. 



79 



WO 02/085859 



PCT/US02/12064 



7. A method of claim 6 wherein B is a substituted group, substituted by -CN, 
halogen up to per halo, Ci-io alkyl, Cmo alkoxy,-OH, up to per halo substituted Cmo 
alkyl, up to per halo substituted Cmo alkoxy, -OR 7 , -SR 7 , -NR 7 R 7 ' -C0 2 R 7 , - 
C(0)NR 7 R 7 ', -C(0)R 7 or -NO2, wherein each R 7 and R 7 ' are independently selected from 
hydrogen, Cmo alkyl, Cmo alkoxy, C2-10 alkenyl, Cmo alkenoyl, up to per halosubstituted 
Cmo alkyl, up to per halosubstituted Cmo alkoxy, up to per halosubstituted C2-10 alkenyl 
and up to per halosubstituted Cmo alkenoyl. 

8. A compound of claim 6 wherein M in the formula — L-^ML 1 ) for B is — 0-, - 
CH 2 -, -S-, -NH-, -C(O)-, -0-CH 2 -or-CH 2 -0-. 

9. A method of claim 6, wherein A has 1-3 substituents selected from the group 
.consisting of Cmo alkyl, up to per halo substituted Cmo alkyl, -CN, -OH, halogen, Cmo 
alkoxy, up to per halo substituted Cmo alkoxy and C3-10 heterocyclic moieties having at 
least 5 cyclic members and 1 to 2 heteroatoms selected from the group of consisting of 
nitrogen, oxygen and sulfur. 

10. A method of claim 6 wherein L 1 is substituted 1 to 3 times by one or more 
substituents selected from the group consisting of -CN, halogen up to per halo, Cmo 
alkyl, Cmo alkoxy,-OH, up to per halo substituted Cmo alkyl, up to per halo substituted 
Cmo alkoxy, -OR 7 , -SR 7 , -NR 7 R 7 ' -C0 2 R 7 , -C(0)NR 7 R 7 ', -C(0)R 7 or -NO2, wherein 
each R 7 and R 7 ' is independently selected from hydrogen, Cmo alkyl, Cmo alkoxy, C2-10 
alkenyl, Cmo alkenoyl, up to per halosubstituted Cmo alkyl, up to per halosubstituted C\. 
10 alkoxy, up to per halosubstituted C2-10 alkenyl and up to per halosubstituted Cmo 
alkenoyl. 

11. A method of claim 1 wherein a pharmaceutically acceptable salt of a 
compound of formula I is administered which is selected from the group consisting of 

a) basic salts of organic acids and inorganic acids selected from the group 
consisting of hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric 



SO 



WO 02/085859 



PCT/US02/12064 



acid, methanesulfonic acid, trifluorosulfonic acid, benzenesulfonic acid, p- 
toluene sulfonic acid (tosylate salt), 1-napthalene sulfonic acid, 2-napthalene 
sulfonic acid, acetic acid, trifluoro acetic acid, malic acid, tartaric acid, citric 
acid, lactic acid, oxalic acid, succinic acid, fumaric acid, maleic acid, benzoic 
acid, salicylic acid, phenylacetic acid, and mandelic acid; and 
b) acid salts of organic and inorganic bases containing cations selected from the 
group consisting of alkaline cations, alkaline earth cations, the ammonium 
cation, aliphatic substituted ammonium cations and aromatic substittued 
ammonium cations. 

12. A method as in claim 1 for the treatment of a disease other than cancer. 

13. A method as in claim 1 wherein the condition within a host treated by 
administering a compound of formula I is rheumatoid arthritis, osteoarthritis, septic 
arthritis, tumor metastasis, periodontal disease, corneal ulceration, proteinuria, coronary 
thrombosis from atherosclerotic plaque, aneurysmal aortic, birth control, dystrophobic 
epidermolysis bullosa, degenerative cartilage loss following traumatic joint injury, 
osteopenias mediated by MMP activity, tempero mandibular joint disease or demyelating 
disease of the nervous system. 

14. A method as in claim 1 wherein the condition within a host treated by 
administering a compound of formula I is rheumatic, fever,, .bone resorption, 
postmenopausal osteoperosis, sepsis, gram negative sepsis, septic shock, endotoxic 
shock, toxic shock syndrome, systemic inflammatory response syndrome, inflammatory 
bowel disease (Crohn's disease and ulcerative colitis), Jarisch-Herxheimer reaction, 
asthma, adult respiratory distress syndrome, acute pulmonary fibrotic disease, pulmonary 
sarcoidosis, allergic respiratory disease, silicosis, coal worker's pneumoconiosis, alveolar 
injury, hepatic failure, liver disease during acute inflammation, severe alcoholic hepatitis, 
malaria (Plasmoditvm falciparum malaria and cerebral malaria), non-insulin-dependent 
diabetes mellitus (TS1TDDM), congestive heart failure, damage following heart disease, 
atherosclerosis, Alzheimer's disease, acute encephalitis, brain injury, multiple sclerosis 



81 



WO 02/085859 



PCT/US02/12064 



(demyelation and oligodendrocyte loss in multiple sclerosis), advanced cancer, 
lymphoid malignancy, pancreatitis, impaired wound healing in infection, inflammation 
and cancer, myelodysplastic syndromes, systemic lupus erythematosus, biliary cirrhosis, 
bowel necrosis, psoriasis, radiation injury/ toxicity following administration of 
monoclonal antibodies, host-versus-graft reaction (ischemia reperfusion injury and 
allograft rejections of kidney, liver, heart, and skin), lung allograft rejection (obliterative 
bronchitis) or complications due to total hip replacement. 

15. A method as in claim 1 wherein the condition within a host treated by 
administering a compound of formula I is an an infectious disease selected from the 
group consisting of tuberculosis, Helicobacter pylori infection during peptic ulcer 
disease, Chaga's disease resulting from Trypanosoma cruzi infection, effects of Shiga- 
like toxin resulting from E. coli infection, effects of enterotoxin A resulting from 
Staphylococcus infection, meningococcal infection, and infections from Borrelia 
burgdorferi, Treponema pallidum, cytomegalovirus, influenza virus,' Theiler's 
encephalomyelitis virus, and the human iminunodeficiency virus (HIV). 

16. A method as in claim 3 wherein: 
R a and Rb are, 

a) independently hydrogen, 

a carbon based moiety selected from the group consisting of Ci-Cio alkyl, Ci-Cio 
alkoxy, C3-10 cycloalkyl having 0-3 hetero atoms selected from N, S and O, C2-10 alkenyl, 
Ci-10 alkenoyl, C6-u aryl, C3-12 hetaryl having 1-3 heteroatoms selected from O, N and S, 
C7-24 aralkyl, C7-C24 alkaryl, substituted C1-10 alkyl, substituted C1-10 alkoxy, substituted 
C3-10 cycloalkyl having 0-3 heteroatoms selected from N, S and O, substituted aryl, 
substituted C3.12 hetaryl having 1-3 heteroatoms selected from N. S and O, substituted C7. 
24 aralkyl, substituted C7.24 alkaryl, where R a and R b are a substituted group, they are 
sxibstituted by halogen up to per halo, hydroxy, d_io alkyl, C3.12 cycloalkyl having 0-3 
heteroatoms selected from O, S andN, C3.12 hetaryl having 1-3 heteroatoms selected 
from N, S and O, C1-10 alkoxy, Ce-u aryl, C1-6 halo substituted alkyl up to per halo alkyl, 
C6-C12 halo substituted aryl up to per halo aryl, C3-C12 halo substituted cycloalkyl having 



82 



WO 02/085859 



PCT/US02/12064 



0-3 heteroatoms selected from N, S and O, up to per halo cycloalkyl, halo substituted C3- 
C12 hetaryl up to per halo heteraryl, halo substituted C7-C24 aralkyl up to per halo aralkyl, 
halo substituted C7-C24 alkaryl up to per halo alkaryl, and -C(0)R g ; or 

-OSi(Rf)3 where Rf is hydrogen, Ci-io alkyl, C1-10 alkyl, Cmo alkoxy, C3-C10 
cycloalkyl having 0-3 heteroatoms selected from O, S and N, C6-12 aryl, C3-C12 hetaryl 
having 1-3 heteroatoms selected from O, S andN, C7.24 aralkyl, substituted Cuo alkyl, 
substituted C1-C10 alkoxy, substituted C3-C12 cycloalkyl having 0-3 heteroatoms selected 
from O, S and N, substituted C3-Q2 heteraryl having 1-3 heteroatoms selected from O, S, 
and N, substituted C6-12 a *ylr and substituted C7-24 alkaryl, where R f is a substituted group 
it is substituted halogen up to per halo, hydroxy, C1-10 alkyl, C3-12 cycloalkyl having 0-3 
heteroatoms selected from O, S andN, C3-12 hetaryl having 1-3 heteroatoms selected 
fromN, S and O, Ci-io alkoxy, Ce-i2 aryl, C y .-C24 alkaryl, C7-C24 aralkyl, Ci-e halo 
substituted alkyl up to per halo alkyl, C&-C\2 halo substituted aryl up to per halo aryl, C3- 
C12 halo substituted cycloalkyl having 0-3 heteroatoms selected from N, S and O, up to 
per halo cycloalkyl, halo substituted C3-Q2 hetaryl up to per halo heteraryl, halo 
substituted C7-C24 aralkyl up to per halo aralkyl, halo substituted C7-C24 alkaryl up to per 
halo alkaryl, and -C(0)R g , 

or 

b) R a and Rb together form a 5-7 member heterocyclic structure of 1-3 
heteroatoms selected from N, S and O, or a substituted 5-7 member heterocyclic structure 
of 1-3 heteroatoms selected from N, S and O with substituents selected from the group 
consisting of halogen up to per halo, hydroxy, Cmo alkyl,,, C3.U cycloalkyl having 0-3 
heteroatoms selected from O, S and N, C3-12 hetaryl having 1-3 heteroatoms selected 
from N, S and O, d-io alkoxy, Ce-u aryl, C7-C24 alkaryl, C 7 -C 2 4 aralkyl, halo substituted 
C1-6 alkyl up to per halo alkyl, halo substituted C6-C12 aryl up to per halo aryl, halo 
substituted C3-C12 cycloalkyl having 0-3 heteroatoms selected from N, S and O, up to per 
halo cycloalkyl, halo substituted C3-Q2 hetaryl up to per halo heteraryl, halo substituted 
C7-C12 aralkyl up to per halo aralkyl, halo substituted C7-C24 alkaryl up to per halo 
alkaryl, and -C(0)R g , 

or 



83 



WO 02/085859 



PCT/US02/12064 



c) one of R a or Rb is -C(O)-, a C1-C5 divalent alkylene group or a substituted 
C1-C5 divalent alkylene group bound to the moiety L to form a cyclic structure with at 
least 5 members, 

wherein the substituents of the substituted C1-C5 divalent alkylene group are selected 
from the group consisting of halogen, hydroxy, C1-10 alkyl, C3.12 cycloalkyl having 0-3 
heteroatoms selected from O, S and N, C3-12 hetaryl having 1-3 heteroatoms selected 
from N, S and O, C1-10 alkoxy, C6-12 aryl, C7-C24 alkaryl, C7-C24 aralkyl, Ci-6 halo 
substituted alkyl up to per halo alkyl, C6-C 12 halo substituted aryl up to per halo aryl, C3- 
C12 halo substituted cycloalkyl having 0-3 heteroatoms selected from N, S and O, up to 
per halo cycloalkyl, halo substituted C3-C12 hetaryl up to per halo heteraryl, halo 
substituted C7-C24 aralkyl up to per halo aralkyl, halo substituted C7-C24 alkaryl up to per 
halo alkaryl, and -C(0)R g , 

where R g is C M0 alkyl; -CN, -C0 2 Rd, -ORd, -SRd,. -NO2, -C(O) Re, -NRaRe, -NRd 
C(0)ORe and -NRd C(0)Re, and Rj and Re are independently selected from the group 
consisting of hydrogen, Cmo, alkyl, C1-10 alkoxy, C3.10 cycloalkyl having 0-3 heteroatoms 
selected from O, N and S, C6-12 aryl, C3-C12 hetaryl with 1-3 heteroatoms selected from 
O, N and S and C7-C24 aralkyl, C7-C24 alkaryl, up to per halo substituted C1-C10 alkyl, up 
to per halo substituted C3-C10 cycloalkyl having 0-3 heteroatoms selected from O, N and 
S, up to per halo substituted C6-C14 aryl, up to per halo substituted C3-C12 hetaryl having 
1-3 heteroatoms selected from O, N, and S, halo substituted C7-C24 alkaryl up to per halo 
alkaryl, and up to per halo substituted C7-C24 aralkyl. 

17. A method as in claim 4, wherein said substituted cyclic moiety L 1 is 
phenyl, pyridyl or pyrimidinyl. 

18. A method of claim 3 wherein L 1 is substituted by -C(0)NR a R b or - 
S0 2 NR a R b . 

19. A method for the treatment of a disease mediated by p38 kinase other than 
cancer which comprises administering a compound selected from the group consisting of 



84 



WO 02/085859 



PCT/US02/12064 



Af-(2-Methoxy-3-qiiinolyl)-Af'-(4-[^ 

iV-(2-Methoxy-3-quinolyl)-A r '-(4-[2-(A r -methylcarbamoyl)-4-pyridy 

A f -(2-Methoxy-3-quinolyl)-A^'-(4-(2-carbamoyl-4-pyridyloxy)phenyl)urea 

iV-(2-Methoxy-3-qumolyl)-iV'-(3-[2-(A r -methylcarbamoyl)-4-pyridyloxy 

A^-(2-Methoxy-3-qixinolyl)-A'''-(3-(2-carbamoyl)-4-pyridyloxy)phenyl)iirea 

A^(2-Memoxy-3-qumolyl)-AT-(4-[3-(^ 

7V-(2-Methoxy-3-quinolyl)-iV'-(4-[4-methoxy-3-(N- 
methylcarbamoyl)phenoxy]phenyl)urea 

A^-(34soquinolyl)-A^'-(4-[2-(iV-methylcarbamoyl)-4-pyridyloxy]phenyl)urea 
and pharmaceutically acceptable salts thereof. 

20. A compound of the following formula 

A'-D-B' (I) 

or a pharmaceutically acceptable salt thereof, wherein 

D is -NH-C(0)-NH-, 

A' is selected from the group consisting of substituted t-butylpyridinyl, 
unsubstituted t-butylpyridiyL substituted (trifluoromethyl)pyridyl, unsubstituted 
(trifluoromethyl)pyridyl, substituted isopropylpyridyl, unsubstituted isopropylpyridyl, 
substituted (2-methyl-2-butyl)pyridyl, unsubstituted (2-methyl-2-butyl)pyridyl, 
substituted (3-ethyl-3-pentyl)pyridyl, unsubstituted (3-ethyl-3-pentyl)pyridyl, substituted 
isoquinolinyl, unsubstituted isoquinolinyl and unsubstituted quinolinyl, 

B' is 



85 



WO 02/085859 



PCT/US02/12064 



a) a substituted or unsubstituted aryl ring having 6 cyclic members, 

b) a substituted or unsubstituted heterocyclic, ring having at least 5 cyclic 
members and 1-3 heteroatoms sleeted from O, S andN, 

c) a substituted or imsubstituted fused ring structure of from 2-3 fused aryl rings, 
hetaryl rings or both aryl or hetaryl rings of up to 30 carbon atoms or 



where A' is substituted or unsubsituted t-butylpyridyl (trifiuoromethyl)pyridyl, 
isopropylpyridyl, (2-methyl-2-butyl)pyridyl or (3-ethyl-3-pentyl)pyridyl, or 



where A' is substituted isoquinolinyl, imsubstituted isoquinolinyl or unsubstituted 
quinolinyl. 

21. A pharmaceutical composition comprising a compound of claim 20 and a 
physiologically acceptable carrier. 

22. A compound of claim 20, wherein A' has 1-3 substituents selected from the 
group consisting of Ci-io alkyl, up to per halo substituted Ci-io alkyl, -CN, -OH, halogen, 
Ci-io alkoxy, up to per halo substituted Ci_io alkoxy and C3-10 heterocyclic moieties 
having at least a five cyclic members and 1 to 2 heteroatoms selected from the group of 
consisting of nitrogen, oxygen and sulfur. 





86 



WO 02/085859 



PCT/US02/12064 



23. A compound of claim 20 wherein B' is a substituted group substituted by - 
CN, halogen, Ci-io alkyl, C W o alkoxy,-OH, up to per halo substituted Ci-io alkyl, up to 
per halo substituted Clio alkoxy -OR 7 , -SR 7 , -NR 7 R 7 ', -NR 7 C(0)OR 7 ', -NR 7 C(0)R 7 ' or - 
NO2, wherein each R 7 and R 7 ' is independently selected from hydrogen, Clio alkyl, Cmo 
alkoxy, C2-10 alkenyl, Ci-io alkenoyl, up to per halosubstituted Ci-io alkyl, up to per 
halosubstituted d.10 alkoxy, up to per halosubstituted C2-10 alkenyl and up to per 
halosubstituted Ci-io alkenoyl. 

24. A compound of claim 20 wherein B' is thiophene, substituted thiophene, 
substituted phenyl, substituted phenyl, pyridinyl, substituted pyridinyl, pyrimidinyl, 
substituted pyrimidinyl, quinolinyl, substituted quinolinyl, isoquinolinyl, substituted 
isoquinolinyl, napthyl or substituted napthyl. 

25. A compound of claim 20 which is a pharmaceutically acceptable salt of a 
compound of formula I' selected from the group consisting of 

a) basic salts of organic acids and inorganic acids selected from the group 
consisting of hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric 
acid, methanesulfonic acid, trifluoro sulfonic acid, benzenesulfonic acid, p- 
toluene sulfonic acid (tosylate salt), 1-napthalene sulfonic acid, 2-napthalene 
sulfonic acid, acetic acid, trifhioroacetic acid, malic acid, tartaric acid, citric 
acid, lactic acid, oxalic acid, succinic acid, fumaric acid, maleic acid, benzoic 
acid, salicylic acid, phenyiacetic acid, and mandelic acid; and 

b) acid salts of organic and inorganic bases containing cations selected from the 
group consistng of alkaline cations, alkaline earth cations, the ammonium 
cation, aliphatic substituted ammonium cations and aromatic substituted 
ammonium cations. 

26. A compound selected from the group consisting of 

N-(4-tert-butylpyridinyl)-N'-(4-methylphenyl) urea 
N-(4-tert-butylpyridinyl)-N'-(4-flviorophenyl) urea 

87 



WO 02/085859 



PCT/US02/12064 



N-(4-tert-hutylpyridinyl)-N'-(2,3-dichlorophenyl) urea 
N-(4-tert-butylpyridinyl)-N' -(1 -naphthyl) urea 
N-(4-tert-butylpyridmyl)-N'-(4-)4-methoxyphenoxy)phenyl) urea 
N-(2-)(54rifluoromethyl)pyridinloxy-N'-(4-)4-pyridylmethyl)phenyl) urea 
N-(2-)(54rifiuoromethyl)pyridinloxy-N , -(3-)4-pyridylthio)phenyl) urea 
N-(3-isoquinolyl)-N'-(4-methylphenyl) urea 
N-(3-isoquinolyl)-N'-(4-fluorophenyl) urea 
N-(3-isoquinolyl)-N'-(2 3 3-dich.loroplienyl) urea 
N-(3-isoquinolyl) : N'-(l-naphthyl) urea 
N-(3 -iso quinolyl)-N' -(4-)4-pyridinylmethyl)phenyl) urea 
N-(3 -quinolyl)-N' - (4-)4-pyridinylmethyl)phenyl) urea 

27. A method of treating a disease mediated by p38 within a host, said method 
comprising administering a compound of claim 20. 

28. A pharmaceutical composition for the treatment of a disease within a host 
mediated by p38 comprising an amount of a compound of Formula I effective to inhibit 
p38 mediated events, 

A - D - B (I) 

or a pharmaceutically acceptable salt thereof, in an amount effective to treat a disease 
mediated by p3 8 and a physiologically acceptable carrier: 

wherein 

D is -NH-C(0)-NH-, 

A is as defined in claim 1 
B is as defined in claim 1 

88 



WO 02/085859 



PCT/US02/12064 



29. A pharmaceutical composition as in claim 28 wherein B of formula I is 

a) a substituted or unsubstituted bridged cyclic structure of up to 30 carbon 
atoms, 

b) a substituted or unsubstituted 6 member cyclic aryl moiety or a 5-6 member 
cyclic hetaryl moiety or 

c) a substituted or unsubstituted fused ring structure of from 2-3 fused aryl rings, 
hetaryl rings or both aryl and hetaryl rings. 

30. A pharmaceutical composition as in claim 29 wherein B of formula I is a 
bridged cyclic structure of the formula -L^ML 1 ),, where L is a 5 or 6 membered cyclic 
structure bound directrly to D, L 1 comprises a substituted cyclic moiety having a least 5 
members, M is a bridging group having at least one atom, q is an integer of from 1-3, and 
each cyclic structure of L and L 1 contains 0-4 members of the group consisting of 
nitrogen, oxygen and sulfur, wherein L 1 is substituted by at least one substituent selected 
from the group consisting of -SO2R*, -C(0)R x , and -C(NR y )R z wherein R y is hydrogen 
or a carbon based moiety of up to 24 carbon atoms optionally containing heteroatoms 
selected from N, S and O and optionally halosubstituted, up to per halo, 

R z is hydrogen or a carbon based moiety of up to 30 carbon atoms optionally 
containing heteroatoms selected from N, S and O and optionally substituted by halogen, 
hydroxy and carbon based substituents of up to 24 carbon atoms, which optionally 
contain heteroatoms selected from N, S and O and are optionally substituted by halogen; 

R x is R z or NR a Rb where R a and Rb are 

a) independently hydrogen, 

a carbon based moiety of up to 30 carbon atoms optionally containing 
heteroatoms selected from N, S and O and optionally substituted by halogen, hydroxy 
and carbon based substituents of up to 24 carbon atoms, which optionally contain 
heteroatoms selected from N, S and O and are optionally substituted by halogen, or 

-OSi(Rf)3 where Rf is hydrogen or a carbon based moiety of up to 24 carbon 
atoms optionally containing heteroatoms selected from N, S and O and optionally 
substituted by halogen, hydroxy and carbon based substituents of up to 24 carbon atoms, 



89 



WO 02/085859 



PCT/US02/12064 



which optionally contain heteroatoms selected from N, S and O and are optionally 
substituted by halogen; or 

b) R a and Rb together form a 5-7 member heterocyclic structure of 1-3 
heteroatoms selected from N, S and O, or a substituted 5-7 member 
heterocyclic structure of 1-3 heteroatoms selected from N, S and O 
substituted by halogen, hydroxy or carbon based substituents of up to 24 
carbon atoms, which optionally contain heteroatoms selected from N, S 
and O and are optionally substituted by halogen; or 

c) one of R a or Rb is -C(O)-, a C1-C5 divalent alkylene group or a substituted 
C1-C5 divalent alkylene group bound to the moiety L to form a cyclic 
structure with at least 5 members, wherein the substituents of the 
substituted C1-C5 divalent alkylene group are selected from the group 
consisting of halogen, hydroxy, and carbon based substituents of up to 24 
carbon atoms, which optionally contain heteroatoms selected from N, S 
and O and are optionally substituted by halogen. 

31. A pharmaceutical composition as in claim 30 wherein the cyclic structures 
of B and L bound directly to D are not substituted in the ortho position by —OH or a 
moiety having an ionizable hydrogen and a pKa of 10 or less. 

32. A pharmaceutical composition as in claim 28 wherein B of Formula I is a 
substituted or unsubstituted six member aryl moiety or at least a five member heterocylic 
moiety, said heterocyclic' moiety having 1 to 4 members selected from the group of 
hetaryl atoms consisting of nitrogen, oxygen and sulphur with the balance of the 
heterocylic moiety being carbon. 

33. A pharmaceutical composition as in claim 30 wherein B of Formula I is an 
unsubstituted phenyl group, an imsubstituted pyridyl group, an unsubstituted pyrimidinyl 
group, a phenyl group substituted by a substituent selected from the group consisting of 
halogen and Wn wherein W and n are as defined in claim 30, a pyrimidinyl group 
substituted by a substitutent selected from halogen and Wn, wherein W and n are as 
defined in Claim 30, or a pyridyl group substituted by a substituent selected from the 
group consisting of halogen and Wn wherein W and n are as defined in claim 30. 

90 



WO 02/085859 



PCT/US02/12064 



34. A pharmaceutical composition as in claim 30, wherein L, the 5 or 6 
member cyclic structure bound directly to D, is a substituted or unsubstituted 6 member 
heteroaryl moiety, wherein said heteroaryl moiety has 1 to 4 members selected from the 
group of heteroatoms consisting of nitrogen, oxygen and sulphur with the balance of said 
hetaryl moiety being carbon, wherein the one or more substituents are selected from the 
group consisting of halogen and Wn, wherein W and n are as defined in claim 30. 

35. A pharmaceutical composition as in claim 30, wherein L, the 5 or 6 
member cyclic structure bound directly to D, is a substituted phenyl, substituted 
thiophene, unsubstituted thiophene, substituted napthyl, unsubstituted napthyl, 
unsubstituted phenyl, substituted pyridyl, unsubstituted pyridyl group, unsubstituted 
pryimidinyl or substituted prymidinyl. 

36. A pharmaceutical composition as in claim 30, wherein said substituted cyclic 
moiety L 1 is phenyl, pyridyl or pyrimidinyl and M is one or more bridging groups 
selected from the group consisting of -0-, -S-, -N(R 7 )-, -(CH 2 ) m -, -C(0)-, -CH(OH)-, - . 
(CH 2 ) m O-, -(CH 2 ) m S-, -(CH 2 ) m N(R 7 )-, -0(CH 2 ) m - CHX\ -CX a 2 -, -S-(CH 2 ) m - and - 
N(R 7 )(CH 2 ) m -, where m= 1-3, X a is halogen and R 7 is hydrogen or a carbon based moiety 
of up to 24 carbon atoms, optionally containing heteroatoms selected from N, S and O 
and optionally substituted by halogen up to per halo. 

37. A pharmaceutical composition as in claim 30 wherein L 1 is substituted by 
-C(0)R x . 

38. A pharmaceutical composition as in claim 30 wherein L 1 is substituted by 
-C(0)R x or -S0 2 R x , wherein R x is NRRb. 

39. A pharmaceutical composition for the treatment of a disease within a host 
mediated by p38 comprising a compound selected from the group consisting of 

A/-(2-Methoxy-3-quinolyl)-iV'-(4-[3-(iV'-methylcarbamoyl)phenoxy]phenyl)urea 
A^-(2-Medioxy-3-quinolyl)-iV'-(4-[2-(iV-methylcarbamoyl)-4-pyridyloxy]phenyl)urea 



91 



WO 02/085859 



PCT/US02/12064 



7V"-(2-Methoxy-3-quinolyl)-iV'-(4-(2-carbamoyl-4-pyridyloxy)phenyl)urea 

A r -(2-Methoxy-3-q\iinolyl)-iV'<3-[2-(iV-methylcarbamoyl)-4-pyridyloxy]phen^ 

iV-(2-Methoxy-3-qmnolyl)-AA'-(3-(2-carbamoyl)-4-pyridyloxy)phenyl)-urea 

jV"-(2-Methoxy-3-quinolyl)^H4^3-(A r -iso 

A r -(2-Methoxy-3-quinolyl)-A^'-(4-[4-methoxy-3-(N- 
methylcarbamoyl)phenoxy]phenyl)urea 

A^(3-Isoquinolyl)-N 1 -(4-[2-(N-methylcarbamoyl)-4-pyridyIoxy]phenyl)iirea 
and pharmaceutically acceptable salts thereof. 



92 



INTERNATIONAL SEARCH REPORT 



In ional Application No 

PCT/US 02/12064 



A. CLASSIFICATION OF SUBJECT MATTER 

IPC 7 C07D213/75 C07D217/22 C07D401/12 C07D215/38 C07D403/12 
A61K31/44 A61K31/47 A61P29/00 

According lo International Patent Clas sification (IPC) orto both national classification and IPC 

B. FIELDS SEARCHED 

Minimum documentation searched (classification system followed by classification symbols) 

IPC 7 C07D 



Documentation searched other than minimum documentation to the extent that such documents are included in the fields searched 
Electronic data base consulted during the international search (name of data base and, where practical, search terms used) 

EPO-Internal , WPI Data, PAJ, BEILSTEIN Data 



C. DOCUMENTS CONSIDERED TO BE RELEVANT 



Category ° Citation of document, with indication, where appropriate, of the relevant passages 



Relevant to claim No. 



MUIJLWIJK-KOEZEN, O.E. ET. AL . : 

"Isoquinol Ine and Quinazoline Urea 

Analogues as Antagonists for the Human 

Adenosine A3 Receptor." 

JOURNAL OF MEDICINAL CHEMISTRY, 

vol. 43, no. 11, 2000, pages 2227-38, 

XP002147879 

Table 1, compounds 8a, 8b, 8d 

_/-- 



20,21, 
25,28, 
29,32,33 



Further documents are listed in the continuation of box C. 



Patent family members are listed in annex. 



" Special categories of cited documents : 

"A" document defining the general state of the art which is not 
considered to be of particular rele/ance 

"E" earlier document but published on or after the international 
filing date 

"L" document which may throw doubts on priority claim(s)or 
which is cited to establish the publication date of another 
citation or other special reason (as specified) 

"O* document referring to an oral disclosure, use, exhibition or 
other means 

"P" document published prior to the international filing date but 
later than the priority dale claimed 



'T - later document published after the international filing date 
or priority date and not in conflict with the application but 
cited to understand the principle or theory underlying the 
invention 

"X" document of particular relevance; the claimed invention 
cannot be considered novel or cannot be considered to 
involve an inventive step when the document is taken alone 

"Y" document of particular relevance; the claimed invention 

cannot be considered to involve an inventive step when the 
document is combined with one or more other such docu- 
ments, such combination being obvious to a person skilled 
in the art. 

document member of the same patent family 



Date of the actual completion of the international search 

13 September 2002 


Date of mailing of the international search report 

20/09/2002 


Name and mailing address of the ISA 

European Patent Office, P.B. 5818 Patentlaan 2 
NL - 2280 HV Rijswp 
Tel. (+31-70) 340-2040. Tx. 31 651 epo nl. 
Fax: (+31-70) 340-3016 


Authorized officer 

Helps, I 



Foim PCT/1SA/210 (second sheet) (July 1992) 



page 1 of 2 



INTERNATIONAL SEARCH REPORT 



Ir-^.-.^tional Application No 

PCT/US 02/12064 



C. (Continuation) DOCUMENTS CONSIDERED TO BE RELEVANT 



Category ° 


Citation of document, with indication.where appropriate, of trie relevant passages 


Relevant to claim No. 


A 


f ARI TNG R Ul FT Al 


9D ?1 




" l-( 3-Cyanobenzyl p i peri di n-4-yl )-5-methyl - 




4-pnenyl 1 , 3-dihydroimidazol-2-one : A 






Oc IctU 1 Vtf niyll ATT 1 I II Lj rtllU ay U 1] 1 i> b TUl U I lu 






nUlllall U Up dill 1 1 It: 1/4 l\cL.tf|J LUl WILlI LALc ] 1 fcrll L 






Selectivity over Ion Channels" 






JOURNAL OF MEDICINAL CHEMISTRY, 






\/n1 &9 nn 1 A 1 QQQ nanpc 970^—1 P\ 
vui . H-t., nu. J.yi7i7 , payt?i> l/ud j.o 3 












Tab! p 7 romnminfi 7 




X 


US 4 279 639 A ( 0KAM0T0 ET. AL.) 


20,22 




21 July 1981 (1981-07-21) 




tr A amp 1 co Zj O 




y 




1 9 ft 7 




1 Julv 1999 f 1999-07-01") 

X U U 1 jr J. Z7 Z* ZS \ 1. Zs Z/ Z? \J I \J A. J 


9 1 1 -1 R 






28,29,32 




page 4, line 28 -page 7, line 17; claims 




V 

1 






y 
A 








ziu juiy zuuu v^uuu u/ ) 


11_1C 






9Q on oo 


V 
I 


1 dU It 0, UUIIipUUMU IIU. 7 






page 6, line 29 -page 8, line 9 




A 
H 


UUrlHo , U . CI. ML . . I r ileliy I 0 pyr dZU I j I 


j.— oy 




ui cdo . ruuciiu alio oc I cut t vc poo k i iiaoc 






I nh i bi tops . " 






BIOORGANIc'AND MEDICINAL CHEMISTRY 






LETTERS, 






vui . iu , lUuu 5 pages £UOi ArvjUM-^njooUr 










A 


W0 99 32111 A (BAYER CORPORATION) 


1-39 




1 July 1999 (1999-07-01) 






page 5, line 15 -page 6, line 9; claims; 






exampl es 




P,Y 


W0 01 36403 A (BOEHRINGER INGELHEIM 


1-39 




PHARMACEUTICALS INC.) 






25 May 2001 (2001-05-25) 






claims; examples 





Form PCT/ISA/210 (continuation of second sheet) (July 1992) 



page 2 of 2 



INTERNATIONAL SEARCH REPORT 



International application-No. 
PCT/US 02/12064 



Box i Observations where certain claims were found unsearchable (Continuation of item 1 of first sheet) 



This International Search Report has not been established in respect of certain claims under Article 17(2)(a) for the following reasons: 
1. [Y] Claims Nos.: 

because they relate to subject matter not required to be searched by this Authority, namely: 

Although claims 1-19 and 27 are directed to a method of treatment of the 
human/animal body, the search has been carried out and based on the alleged 
effects of the compound/composition. 



□ 



Claims Nos.: 

because they relate to parts of the international Application that do not comply with the prescribed requirements to such 
an extent that no meaningful International Search can be carried out, specifically: 



3. \^\ Claims Nos.: 

because they are dependent claims and are not drafted in accordance with the second and third sentences of Rule 6.4(a). 

Box II Observations where unity of invention is lacking (Continuation of item 2 of first sheet) 

This International Searching Authority found multiple indentions in this international application, as follows: 



1 . As all required additional search fees were timely paid by the applicant, this International Search Report covers all 
' ' searchable claims. 

2. | | As all searchable claims could be searched without effort justifying an additional fee, this Authority did not invite payment 

of any additional fee. 



3. I I As only some of the required additional search fees were timely paid by the applicant, this International Search Report 
' — ' covers only those claims for which fees were paid, specifically claims Nos.: 



4. | I No required additional search fees were timely paid by the applicant. Consequently, this International Search Report is 
restricted to the invention first mentioned in the claims; it is covered by claims Nos.: 



Remark on Protest j The additional search fees were accompanied by the applicant's protest. 

j No protest accompanied the payment of additional search fees. 



Form PCT/ISA/210 (continuation of first sheet (1)) (July 1998) 



INTERNATIONAL SEARCH REPORT 

Information on patent family members 



In ional Application No 

PCT/US 02/12064 



Patent document 
cited in search report 



Publication 
date 



Patent family 
member(s) 



Publication 
date 



US 4279639 



21-07-1981 



AU 
AU 
BR 
CA 
EP 
ZA 



536653 B2 
5244479 A 
7907120 A 
1134832 Al 
0010770 Al 
7905821 A 



W0 9932463 



01-07-1999 



AU 1939999 A 

CA 2315715 Al 

DE 1042305 Tl 

EP 1042305 Al 

ES 2154252 Tl 

JP 2001526276 T 

W0 9932463 Al 



17-05-1984 
08-05-1980 
05-08-1980 
02-11-1982 
14-05-1980 
26-11-1980 



12-07-1999 
01-07-1999 
19-04-2001 
11-10-2000 
01-04-2001 
18-12-2001 
01-07-1999 



WO 0041698 A 20-07-2000 AU 2725000 A 01-08-2000 

EP 1158985 Al 05-12-2001 

WO 0041698 Al 20-07-2000 

US 2002065296 Al 30-05-2002 



WO 9932111 A 01-07-1999 



AU 


739642 


B2 


18- 


-10- 


-2001 


AU 


1997199 


A 


12- 


-07- 


-1999 


CA 


2315720 


Al 


01- 


-07- 


-1999 


DE 


1041982 


Tl 


07- 


-06- 


-2001 


EP 


1041982 


Al 


11- 


10- 


-2000 


ES 


2154253 


Tl 


01- 


-04- 


-2001 


JP 


2001526223 


T 


18- 


-12- 


-2001 


WO 


9932111 


Al 


01- 


-07- 


-1999 



W0 0136403 A 25-05-2001 AU 1617901 A 30-05-2001 

EP 1232150 Al 21-08-2002 

W0 0136403 Al 25-05-2001 



Form PCT7ISA/210 (paterrtfamily annex) (July 1992)